--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Jan 27 09:01:29 2015 -0500
@@ -0,0 +1,60 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="squid" version="1.9g">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url" target_filename="squid-1.9g.tar.gz">http://selab.janelia.org/software/squid/squid.tar.gz</action>
+                <action type="autoconf">--enable-lfs</action>
+                <action type="set_environment">
+                    <environment_variable name="LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable>
+                    <environment_variable name="SQUID_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
+                    <environment_variable name="C_INCLUDE_PATH" action="prepend_to">$INSTALL_DIR/include</environment_variable>
+                    <environment_variable name="CPLUS_INCLUDE_PATH" action="prepend_to">$INSTALL_DIR/include</environment_variable>
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+<![CDATA[
+SQUID - library of functions for biological sequence analysis
+Copyright (C) 1992-2002 Washington University School of Medicine
+
+SQUID is a freely redistributable library of C code functions for
+sequence analysis. SQUID also includes a number of small utility
+programs.
+
+To install squid, see the file:
+  INSTALL      -- instructions for installing the programs
+
+If you have any questions about redistributing squid or using 
+squid code in your own work, see the files:
+  COPYRIGHT    -- copyright notice, and information on my distribution policy
+  LICENSE      -- version 2 of the GNU Public License (see COPYRIGHT)
+
+For a web page with more information on squid, see:
+  http://www.genetics.wustl.edu/eddy/software/#squid
+
+You can always download the latest stable release of squid from:
+  ftp://ftp.genetics.wustl.edu/pub/eddy/software/squid.tar.gz
+
+The development codebase is available by anonymous CVS:
+  cvs -d :pserver:anonymous@skynet.wustl.edu:/repository/sre login
+   (password "anonymous")
+  cvs -d :pserver:anonymous@skynet.wustl.edu:/repository/sre checkout squid
+
+If you encounter any bugs in this library, or you have any questions
+or comments, please e-mail me at the address below. Due to limited
+personal time, I may not respond, but I do read all my mail.
+
+   Sean Eddy
+   eddy@genetics.wustl.edu
+
+   HHMI/Dept. of Genetics
+   Washington University School of Medicine
+   660 South Euclid Box 8232
+   Saint Louis Missouri 63110
+   USA
+]]>
+        </readme>
+    </package>
+</tool_dependency>