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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_stringtie_1_0_3 commit 92a9d47a3807a276aa98a38d38e6f0f8caa12389
author iuc
date Thu, 14 May 2015 12:36:16 -0400
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<?xml version="1.0"?>
<tool_dependency>
    <package name="stringtie" version="1.0.3">
      <install version="1.0">
          <actions_group>
              <actions architecture="x86_64" os="linux">
                  <action type="download_by_url">http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.0.3.Linux_x86_64.tar.gz</action>
                    <action type="move_file">
                      <source>stringtie</source>
                        <destination>$INSTALL_DIR/bin</destination>
                    </action>
                </actions>
                <actions architecture="x86_64" os="darwin">
                  <action type="download_by_url">http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.0.3.OSX_x86_64.tar.gz</action>
                    <action type="move_file">
                      <source>stringtie</source>
                        <destination>$INSTALL_DIR/bin</destination>
                    </action>
                </actions>
                <actions>
                  <action type="download_by_url">http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.0.3.tar.gz</action>
                    <action type="shell_command">make release</action>
                    <action type="move_file">
                      <source>stringtie</source>
                        <destination>$INSTALL_DIR/bin</destination>
                    </action>
                </actions>
                <action type="set_environment">
                  <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions_group>
        </install>
        <readme>StringTie is a fast and highly efficient assembler of RNA-Seq
        alignments into potential transcripts. It is primarily a genome-guided
        transcriptome assembler, although it can borrow algorithmic techniques
        from de novo genome assembly to help with transcript assembly. Its input
        can include not only the spliced read alignments used by reference-based
        assemblers, but also longer contigs that were assembled de novo from
        unambiguous, non-branching parts of a transcript.</readme>
    </package>
</tool_dependency>