Mercurial > repos > iuc > package_tpp_4_8_0

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
author iuc
date Tue, 19 May 2015 15:03:29 -0400
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a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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1 <?xml version="1.0"?>
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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2 <tool_dependency>
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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3 <package name="trans_proteomic_pipeline" version="4.8.0">
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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4 <install version="1.0">
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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5 <actions_group>
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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6 <actions architecture="x86_64" os="linux">
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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7 <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/tpp/tpp-4.8.0-Linux-x86_64.tar.gz</action>
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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8 <action type="shell_command">rm tpp-4.8.0-Linux-x86_64.tar.gz</action>
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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9 <action type="move_directory_files">
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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10 <source_directory>.</source_directory>
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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11 <destination_directory>$INSTALL_DIR</destination_directory>
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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12 </action>
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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13 <action type="set_environment">
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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14 <environment_variable action="set_to" name="TPP_ROOT_PATH">$INSTALL_DIR</environment_variable>
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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15 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/</environment_variable>
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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16 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin/</environment_variable>
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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17 </action>
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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18 </actions>
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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19 </actions_group>
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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20 </install>
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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21 <readme>
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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22 Installs and complils the trans proteomic pipeline in version 4.8.0.
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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23 The Trans-Proteomic Pipeline (TPP) is a collection of integrated tools for MS/MS proteomics, developed at the SPC.
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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24
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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25 http://tools.proteomecenter.org/
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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26
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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27 TPP_ROOT_PATH will point to the root path of the installation.
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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28 </readme>
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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29 </package>
a7273394d858 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tpp_4_8_0 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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30 </tool_dependency>