Mercurial > repos > iuc > package_vcftools_0_1_12b
comparison tool_dependencies.xml @ 0:554cce8d37fb draft
Imported from capsule None
| author | iuc |
|---|---|
| date | Mon, 11 Aug 2014 08:27:41 -0400 |
| parents | |
| children | a655cb1dfc58 |
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| -1:000000000000 | 0:554cce8d37fb |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="vcftools" version="0.1.12b"> | |
| 4 <install version="1.0"> | |
| 5 <actions> | |
| 6 <action type="download_by_url">http://downloads.sourceforge.net/project/vcftools/vcftools_0.1.12b.tar.gz</action> | |
| 7 <action type="shell_command">make</action> | |
| 8 <action type="shell_command">PREFIX="$INSTALL_DIR/vcftools" make install</action> | |
| 9 <!-- For some reason, the vcftools binary does not get installed using 'make install' above, so include manually. --> | |
| 10 <action type="shell_command">cp bin/vcftools $INSTALL_DIR/vcftools/bin</action> | |
| 11 <action type="set_environment"> | |
| 12 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/vcftools/bin</environment_variable> | |
| 13 </action> | |
| 14 </actions> | |
| 15 </install> | |
| 16 <readme> | |
| 17 A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project. | |
| 18 http://vcftools.sourceforge.net/ | |
| 19 </readme> | |
| 20 </package> | |
| 21 </tool_dependency> |