Mercurial > repos > iuc > package_vcftools_0_1_12b
view tool_dependencies.xml @ 1:a655cb1dfc58 draft default tip
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author | iuc |
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date | Mon, 11 Aug 2014 08:57:21 -0400 |
parents | 554cce8d37fb |
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<?xml version="1.0"?> <tool_dependency> <package name="vcftools" version="0.1.12b"> <install version="1.0"> <actions> <action type="download_by_url">http://downloads.sourceforge.net/project/vcftools/vcftools_0.1.12b.tar.gz</action> <action type="shell_command">make</action> <action type="shell_command">PREFIX="$INSTALL_DIR/vcftools" make install</action> <!-- For some reason, the vcftools binary does not get installed using 'make install' above, so include manually. --> <action type="shell_command">cp bin/vcftools $INSTALL_DIR/vcftools/bin</action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/vcftools/bin</environment_variable> <environment_variable name="PERL5LIB" action="prepend_to">$INSTALL_DIR/vcftools/lib/perl5/site_perl</environment_variable> </action> </actions> </install> <readme> A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project. http://vcftools.sourceforge.net/ </readme> </package> </tool_dependency>