Mercurial > repos > iuc > package_vsearch_1_9_7

changeset 0:99c947b9fb31 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_9_7 commit 29f6e6424a37947adbe1eba92f0e7d3c83efc042-dirty
author iuc
date Tue, 01 Mar 2016 07:06:41 -0500
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 42 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Mar 01 07:06:41 2016 -0500
@@ -0,0 +1,42 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="vsearch" version="1.9.7">
+        <install version="1.0">
+            <actions_group>
+                <actions architecture="x86_64" os="darwin">
+                    <action type="download_by_url" sha256sum="34f3facaeb4a17bb70efb375f41032b96d542d19726f58e7959b7d5a6f0c069b">
+                        https://github.com/torognes/vsearch/releases/download/v1.9.7/vsearch-1.9.7-osx-x86_64.tar.gz
+                    </action>
+                    <action type="move_file">
+                        <source>./bin/vsearch</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <action type="chmod">
+                        <file mode="755">$INSTALL_DIR/bin/vsearch</file>
+                    </action>
+                </actions>
+                <actions architecture="x86_64" os="linux">
+                    <action type="download_by_url" sha256sum="8bc31056fb9c6d53d74d7ef6c12d979a6cba60acd4bb8fcc883654143e9cf301">
+                        https://github.com/torognes/vsearch/releases/download/v1.9.7/vsearch-1.9.7-linux-x86_64.tar.gz
+                    </action>
+                    <action type="move_file">
+                        <source>./bin/vsearch</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <action type="chmod">
+                        <file mode="755">$INSTALL_DIR/bin/vsearch</file>
+                    </action>
+                </actions>
+
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+        <readme>
+        VSEARCH: Open and free 64-bit multithreaded tool for processing metagenomic sequences, including searching, clustering,
+        chimera detection, dereplication, sorting, masking and shuffling.
+        https://github.com/torognes/vsearch
+        </readme>
+    </package>
+</tool_dependency>