Mercurial > repos > iuc > package_vt_5c735ab14b5603d9f14da6ee0e63d86ba3779934

comparison tool_dependencies.xml @ 0:91635ed3dceb draft

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Imported from capsule None
author bgruening
date Thu, 14 Aug 2014 07:41:49 -0400
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children 294fe74bded6
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-1:000000000000 0:91635ed3dceb
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="vt" version="5c735ab14b5603d9f14da6ee0e63d86ba3779934">
4 <install version="1.0">
5 <actions>
6 <action type="shell_command">git clone --recursive https://github.com/atks/vt.git</action>
7 <action type="shell_command">git reset --hard 5c735ab14b5603d9f14da6ee0e63d86ba3779934</action>
8 <action type="shell_command">make</action>
9 <action type="move_file">
10 <source>vt</source>
11 <destination>$INSTALL_DIR/bin</destination>
12 </action>
13 <action type="set_environment">
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
15 <environment_variable name="VT_ROOT_PATH" action="set_to">$INSTALL_DIR/bin</environment_variable>
16 </action>
17 </actions>
18 </install>
19 <readme>
20 vt is a variant tool set that discovers short variants from Next Generation Sequencing data.
21 http://genome.sph.umich.edu/wiki/Vt
22 https://github.com/atks/vt
23 </readme>
24 </package>
25 </tool_dependency>
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