Mercurial > repos > iuc > package_vt_5c735ab14b5603d9f14da6ee0e63d86ba3779934

annotate tool_dependencies.xml @ 0:91635ed3dceb draft

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author bgruening
date Thu, 14 Aug 2014 07:41:49 -0400
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children 294fe74bded6
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="vt" version="5c735ab14b5603d9f14da6ee0e63d86ba3779934">
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4 <install version="1.0">
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5 <actions>
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6 <action type="shell_command">git clone --recursive https://github.com/atks/vt.git</action>
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7 <action type="shell_command">git reset --hard 5c735ab14b5603d9f14da6ee0e63d86ba3779934</action>
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8 <action type="shell_command">make</action>
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9 <action type="move_file">
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10 <source>vt</source>
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11 <destination>$INSTALL_DIR/bin</destination>
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12 </action>
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13 <action type="set_environment">
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14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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15 <environment_variable name="VT_ROOT_PATH" action="set_to">$INSTALL_DIR/bin</environment_variable>
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16 </action>
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17 </actions>
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18 </install>
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19 <readme>
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20 vt is a variant tool set that discovers short variants from Next Generation Sequencing data.
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21 http://genome.sph.umich.edu/wiki/Vt
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22 https://github.com/atks/vt
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23 </readme>
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24 </package>
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25 </tool_dependency>
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