Mercurial > repos > iuc > pairtools_stats

annotate test-data/pairs_output_with_chromsize.stats @ 2:6cbca5661205 draft

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planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
author iuc
date Tue, 30 Apr 2024 12:02:01 +0000
parents 3c87fa1a3b50
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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1 total 592
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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2 total_unmapped 4
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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3 total_single_sided_mapped 147
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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4 total_mapped 441
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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5 total_dups 0
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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6 total_nodups 441
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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7 cis 441
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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8 trans 0
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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9 pair_types/UU 405
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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10 pair_types/NR 119
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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11 pair_types/MU 21
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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12 pair_types/UR 19
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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13 pair_types/RU 17
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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14 pair_types/MR 6
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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15 pair_types/MM 4
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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16 pair_types/NU 1
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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17 cis_1kb+ 75
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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18 cis_2kb+ 72
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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19 cis_4kb+ 70
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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20 cis_10kb+ 67
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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21 cis_20kb+ 61
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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22 cis_40kb+ 61
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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23 summary/frac_cis 1.0
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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24 summary/frac_cis_1kb+ 0.17006802721088435
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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25 summary/frac_cis_2kb+ 0.16326530612244897
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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26 summary/frac_cis_4kb+ 0.15873015873015872
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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27 summary/frac_cis_10kb+ 0.15192743764172337
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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28 summary/frac_cis_20kb+ 0.1383219954648526
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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29 summary/frac_cis_40kb+ 0.1383219954648526
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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30 summary/frac_dups 0.0
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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31 summary/complexity_naive nan
2
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
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32 summary/dist_freq_convergence/convergence_dist 421697
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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33 summary/dist_freq_convergence/strands_w_max_convergence_dist ++
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
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34 summary/dist_freq_convergence/convergence_rel_diff_threshold 0.05
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
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35 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/++ 25
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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36 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/-- 26
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
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37 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/-+ 7
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
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38 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/+- 383
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
diff changeset
39 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist_all_strands 441
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
diff changeset
40 summary/dist_freq_convergence/n_cis_pairs_above_convergence_dist_all_strands 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
diff changeset
41 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/++ 0.05668934240362812
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
diff changeset
42 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/-- 0.05895691609977324
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
diff changeset
43 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/-+ 0.015873015873015872
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
diff changeset
44 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/+- 0.8684807256235828
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
diff changeset
45 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist_all_strands 1.0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
diff changeset
46 summary/dist_freq_convergence/frac_cis_in_cis_above_convergence_dist_all_strands 0.0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
diff changeset
47 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/++ 0.05668934240362812
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
diff changeset
48 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/-- 0.05895691609977324
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
diff changeset
49 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/-+ 0.015873015873015872
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
diff changeset
50 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/+- 0.8684807256235828
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
diff changeset
51 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist_all_strands 1.0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
diff changeset
52 summary/dist_freq_convergence/frac_total_mapped_in_cis_above_convergence_dist_all_strands 0.0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
diff changeset
53 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/++ 0.05668934240362812
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
diff changeset
54 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/-- 0.05895691609977324
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
diff changeset
55 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/-+ 0.015873015873015872
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
diff changeset
56 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/+- 0.8684807256235828
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
diff changeset
57 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist_all_strands 1.0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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diff changeset
58 summary/dist_freq_convergence/frac_total_nodups_in_cis_above_convergence_dist_all_strands 0.0
0
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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59 chrom_freq/Test_seq/Test_seq 441
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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60 dist_freq/0-1/+- 0
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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61 dist_freq/0-1/-+ 0
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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62 dist_freq/0-1/-- 0
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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63 dist_freq/0-1/++ 0
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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64 dist_freq/1-2/+- 0
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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65 dist_freq/1-2/-+ 0
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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66 dist_freq/1-2/-- 0
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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67 dist_freq/1-2/++ 0
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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68 dist_freq/2-3/+- 0
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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69 dist_freq/2-3/-+ 0
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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70 dist_freq/2-3/-- 0
3c87fa1a3b50 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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71 dist_freq/2-3/++ 0
2
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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72 dist_freq/3-4/+- 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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73 dist_freq/3-4/-+ 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
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74 dist_freq/3-4/-- 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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75 dist_freq/3-4/++ 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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76 dist_freq/4-6/+- 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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diff changeset
77 dist_freq/4-6/-+ 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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78 dist_freq/4-6/-- 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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79 dist_freq/4-6/++ 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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80 dist_freq/6-7/+- 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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81 dist_freq/6-7/-+ 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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82 dist_freq/6-7/-- 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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83 dist_freq/6-7/++ 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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84 dist_freq/7-10/+- 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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diff changeset
85 dist_freq/7-10/-+ 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
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86 dist_freq/7-10/-- 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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87 dist_freq/7-10/++ 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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diff changeset
88 dist_freq/10-13/+- 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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89 dist_freq/10-13/-+ 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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90 dist_freq/10-13/-- 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
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91 dist_freq/10-13/++ 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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92 dist_freq/13-18/+- 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
diff changeset
93 dist_freq/13-18/-+ 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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94 dist_freq/13-18/-- 0
6cbca5661205 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 0
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95 dist_freq/13-18/++ 0
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96 dist_freq/18-24/+- 0
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97 dist_freq/18-24/-+ 0
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98 dist_freq/18-24/-- 0
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101 dist_freq/24-32/-+ 0
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102 dist_freq/24-32/-- 0
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106 dist_freq/32-42/-- 0
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iuc
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108 dist_freq/42-56/+- 7
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109 dist_freq/42-56/-+ 0
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110 dist_freq/42-56/-- 0
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116 dist_freq/75-100/+- 2
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117 dist_freq/75-100/-+ 0
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118 dist_freq/75-100/-- 0
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120 dist_freq/100-133/+- 3
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122 dist_freq/100-133/-- 0
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124 dist_freq/133-178/+- 2
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126 dist_freq/133-178/-- 0
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128 dist_freq/178-237/+- 3
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129 dist_freq/178-237/-+ 0
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130 dist_freq/178-237/-- 0
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132 dist_freq/237-316/+- 57
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133 dist_freq/237-316/-+ 0
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134 dist_freq/237-316/-- 0
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135 dist_freq/237-316/++ 0
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136 dist_freq/316-422/+- 171
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137 dist_freq/316-422/-+ 0
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138 dist_freq/316-422/-- 0
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144 dist_freq/562-750/+- 0
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148 dist_freq/750-1000/+- 1
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152 dist_freq/1000-1334/+- 0
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156 dist_freq/1334-1778/+- 1
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160 dist_freq/1778-2371/+- 0
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164 dist_freq/2371-3162/+- 1
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165 dist_freq/2371-3162/-+ 0
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168 dist_freq/3162-4217/+- 0
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169 dist_freq/3162-4217/-+ 0
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170 dist_freq/3162-4217/-- 0
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172 dist_freq/4217-5623/+- 0
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173 dist_freq/4217-5623/-+ 0
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176 dist_freq/5623-7499/+- 0
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177 dist_freq/5623-7499/-+ 0
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180 dist_freq/7499-10000/+- 2
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181 dist_freq/7499-10000/-+ 0
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184 dist_freq/10000-13335/+- 1
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341 dist_freq/749894209-1000000000/-+ 0
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348 chromsizes/Test_seq 450060