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comparison pathview.xml @ 4:dbac244d2214 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/pathview commit 4abfa1933dc0631419b5a277045fbaf2b2a562b8
author iuc
date Mon, 23 Mar 2026 13:46:44 +0000
parents f1691de443a7
children
comparison
equal deleted inserted replaced
3:f1691de443a7 4:dbac244d2214
1 <tool id="pathview" name="Pathview" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05"> 1 <tool id="pathview" name="Pathview" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05">
2 <description>for pathway based data integration and visualization</description> 2 <description>for pathway based data integration and visualization</description>
3 <xrefs> 3 <xrefs>
4 <xref type="bio.tools">pathview</xref> 4 <xref type="bio.tools">pathview</xref>
5 <xref type="bioconductor">pathview</xref>
5 </xrefs> 6 </xrefs>
6 <macros> 7 <macros>
7 <token name="@TOOL_VERSION@">1.34.0</token> 8 <token name="@TOOL_VERSION@">1.50.0</token>
8 <token name="@VERSION_SUFFIX@">0</token> 9 <token name="@VERSION_SUFFIX@">0</token>
9 </macros> 10 </macros>
10 <requirements> 11 <requirements>
11 <requirement type="package" version="@TOOL_VERSION@">bioconductor-pathview</requirement> 12 <requirement type="package" version="@TOOL_VERSION@">bioconductor-pathview</requirement>
12 <requirement type="package" version="3.14.0">bioconductor-org.ag.eg.db</requirement> 13 <requirement type="package" version="3.22.0">bioconductor-org.ag.eg.db</requirement>
13 <requirement type="package" version="3.14.0">bioconductor-org.at.tair.db</requirement> 14 <requirement type="package" version="3.22.0">bioconductor-org.at.tair.db</requirement>
14 <requirement type="package" version="3.14.0">bioconductor-org.bt.eg.db</requirement> 15 <requirement type="package" version="3.22.0">bioconductor-org.bt.eg.db</requirement>
15 <requirement type="package" version="3.14.0">bioconductor-org.ce.eg.db</requirement> 16 <requirement type="package" version="3.22.0">bioconductor-org.ce.eg.db</requirement>
16 <requirement type="package" version="3.14.0">bioconductor-org.cf.eg.db</requirement> 17 <requirement type="package" version="3.22.0">bioconductor-org.cf.eg.db</requirement>
17 <requirement type="package" version="3.14.0">bioconductor-org.dm.eg.db</requirement> 18 <requirement type="package" version="3.22.0">bioconductor-org.dm.eg.db</requirement>
18 <requirement type="package" version="3.14.0">bioconductor-org.dr.eg.db</requirement> 19 <requirement type="package" version="3.22.0">bioconductor-org.dr.eg.db</requirement>
19 <requirement type="package" version="3.14.0">bioconductor-org.eck12.eg.db</requirement> 20 <requirement type="package" version="3.22.0">bioconductor-org.eck12.eg.db</requirement>
20 <requirement type="package" version="3.14.0">bioconductor-org.ecsakai.eg.db</requirement> 21 <requirement type="package" version="3.22.0">bioconductor-org.ecsakai.eg.db</requirement>
21 <requirement type="package" version="3.14.0">bioconductor-org.gg.eg.db</requirement> 22 <requirement type="package" version="3.22.0">bioconductor-org.gg.eg.db</requirement>
22 <requirement type="package" version="3.14.0">bioconductor-org.hs.eg.db</requirement> 23 <requirement type="package" version="3.22.0">bioconductor-org.hs.eg.db</requirement>
23 <requirement type="package" version="3.14.0">bioconductor-org.mm.eg.db</requirement> 24 <requirement type="package" version="3.22.0">bioconductor-org.mm.eg.db</requirement>
24 <requirement type="package" version="3.14.0">bioconductor-org.mmu.eg.db</requirement> 25 <requirement type="package" version="3.22.0">bioconductor-org.mmu.eg.db</requirement>
25 <requirement type="package" version="3.14.0">bioconductor-org.pf.plasmo.db</requirement> 26 <requirement type="package" version="3.22.0">bioconductor-org.pf.plasmo.db</requirement>
26 <requirement type="package" version="3.14.0">bioconductor-org.pt.eg.db</requirement> 27 <requirement type="package" version="3.22.0">bioconductor-org.pt.eg.db</requirement>
27 <requirement type="package" version="3.14.0">bioconductor-org.rn.eg.db</requirement> 28 <requirement type="package" version="3.22.0">bioconductor-org.rn.eg.db</requirement>
28 <requirement type="package" version="3.14.0">bioconductor-org.sc.sgd.db</requirement> 29 <requirement type="package" version="3.22.0">bioconductor-org.sc.sgd.db</requirement>
29 <requirement type="package" version="3.14.0">bioconductor-org.ss.eg.db</requirement> 30 <requirement type="package" version="3.22.0">bioconductor-org.ss.eg.db</requirement>
30 <requirement type="package" version="3.14.0">bioconductor-org.xl.eg.db</requirement> 31 <requirement type="package" version="3.22.0">bioconductor-org.xl.eg.db</requirement>
31 <requirement type="package" version="1.7.1">r-optparse</requirement> 32 <requirement type="package" version="1.7.5">r-optparse</requirement>
32 </requirements> 33 </requirements>
33 <version_command><![CDATA[ 34 <version_command><![CDATA[
34 echo $(R --version | grep version | grep -v GNU)", pathview version" $(R --vanilla --slave -e "library(pathview); cat(sessionInfo()\$otherPkgs\$pathview\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", optparse version" $(R --vanilla --slave -e "library(optparse); cat(sessionInfo()\$otherPkgs\$optparse\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", dplyr version" $(R --vanilla --slave -e "library(dplyr); cat(sessionInfo()\$otherPkgs\$dplyr\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", ggplot2 version" $(R --vanilla --slave -e "library(ggplot2); cat(sessionInfo()\$otherPkgs\$ggplot2\$Version)" 2> /dev/null | grep -v -i "WARNING: ") 35 echo $(R --version | grep version | grep -v GNU)", pathview version" $(R --vanilla --slave -e "library(pathview); cat(sessionInfo()\$otherPkgs\$pathview\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", optparse version" $(R --vanilla --slave -e "library(optparse); cat(sessionInfo()\$otherPkgs\$optparse\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", dplyr version" $(R --vanilla --slave -e "library(dplyr); cat(sessionInfo()\$otherPkgs\$dplyr\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", ggplot2 version" $(R --vanilla --slave -e "library(ggplot2); cat(sessionInfo()\$otherPkgs\$ggplot2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
35 ]]></version_command> 36 ]]></version_command>
36 <command detect_errors="exit_code"><![CDATA[ 37 <command detect_errors="exit_code"><![CDATA[