Mercurial > repos > iuc > pbmm2
changeset 1:f4ec47f1a8da draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pbmm2 commit 037e03be14baed6dbb55af7830dc0e61d1a48862
| author | iuc |
|---|---|
| date | Mon, 13 Mar 2023 11:34:01 +0000 |
| parents | 29eec6c7bab2 |
| children | 55b7b257e12f |
| files | tool-data/all_fasta.loc.sample tool_data_table_conf.xml.sample |
| diffstat | 2 files changed, 24 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/all_fasta.loc.sample Mon Mar 13 11:34:01 2023 +0000 @@ -0,0 +1,18 @@ +#This file lists the locations and dbkeys of all the fasta files +#under the "genome" directory (a directory that contains a directory +#for each build). The script extract_fasta.py will generate the file +#all_fasta.loc. This file has the format (white space characters are +#TAB characters): +# +#<unique_build_id> <dbkey> <display_name> <file_path> +# +#So, all_fasta.loc could look something like this: +# +#apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa +#hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa +#hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa +# +#Your all_fasta.loc file should contain an entry for each individual +#fasta file. So there will be multiple fasta files for each build, +#such as with hg19 above. +#
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.sample Mon Mar 13 11:34:01 2023 +0000 @@ -0,0 +1,6 @@ +<tables> + <table name="all_fasta" comment_char="#" allow_duplicate_entries="False"> + <columns>value, dbkey, name, path</columns> + <file path="tool-data/all_fasta.loc" /> + </table> +</tables> \ No newline at end of file