Mercurial > repos > iuc > pizzly
annotate tool-data/all_gtf.loc.sample @ 0:f7556cfa4047 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
author | iuc |
---|---|
date | Wed, 13 Sep 2017 22:40:57 -0400 |
parents | |
children |
rev | line source |
---|---|
0
f7556cfa4047
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
parents:
diff
changeset
|
1 #This file lists the locations and dbkeys of all the GFF files |
f7556cfa4047
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
parents:
diff
changeset
|
2 #This file has the format (white space characters are |
f7556cfa4047
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
parents:
diff
changeset
|
3 #TAB characters): |
f7556cfa4047
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
parents:
diff
changeset
|
4 # |
f7556cfa4047
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
parents:
diff
changeset
|
5 #<unique_build_id> <dbkey> <display_name> <file_path> |
f7556cfa4047
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
parents:
diff
changeset
|
6 # |
f7556cfa4047
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
parents:
diff
changeset
|
7 #So, all_gtf.loc could look something like this: |
f7556cfa4047
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
parents:
diff
changeset
|
8 # |
f7556cfa4047
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
parents:
diff
changeset
|
9 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/annotation/apiMel3/apiMel3.gtf |
f7556cfa4047
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
parents:
diff
changeset
|
10 #hg38canon hg38 Human (Homo sapiens): hg38 Canonical /path/to/annotation/hg38/hg38canon.gtf |
f7556cfa4047
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
parents:
diff
changeset
|
11 #hg38full hg38 Human (Homo sapiens): hg38 Representative transcripts /path/to/annotation/hg38/hg38_representative_tx.gtf |
f7556cfa4047
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
parents:
diff
changeset
|
12 # |
f7556cfa4047
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
parents:
diff
changeset
|
13 #Your all_gtf.loc file should contain an entry for each different annotation. |
f7556cfa4047
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
iuc
parents:
diff
changeset
|
14 #So there can be multiple gtf files for each build, such as with hg38 above. |