Mercurial > repos > iuc > plink
comparison test-data/plink_log.txt @ 0:a98caf1d69ab draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/plink commit 555a851b363c015f26d6fcf1f52bcbf3420a0b3b"
| author | iuc |
|---|---|
| date | Mon, 21 Sep 2020 10:09:22 +0000 |
| parents | |
| children |
comparison
equal
deleted
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| -1:000000000000 | 0:a98caf1d69ab |
|---|---|
| 1 PLINK v1.90p 64-bit (16 Jun 2020) | |
| 2 Options in effect: | |
| 3 --bfile plink_input/plink_input | |
| 4 --indep-pairwise 50 5 0.2 | |
| 5 --make-bed | |
| 6 --out plink_output/plink_output | |
| 7 | |
| 8 Hostname: p-body.local | |
| 9 Working directory: /private/var/folders/f7/p887fr2x6hd_jg712040rl580000gn/T/tmpzq_so7fd/job_working_directory/000/90/working | |
| 10 Start time: Tue Sep 15 12:47:24 2020 | |
| 11 | |
| 12 Random number seed: 1600199244 | |
| 13 32768 MB RAM detected; reserving 16384 MB for main workspace. | |
| 14 50 variants loaded from .bim file. | |
| 15 200 people (0 males, 200 females) loaded from .fam. | |
| 16 200 phenotype values loaded from .fam. | |
| 17 Using 1 thread (no multithreaded calculations invoked). | |
| 18 Before main variant filters, 200 founders and 0 nonfounders present. | |
| 19 Calculating allele frequencies... done. | |
| 20 50 variants and 200 people pass filters and QC. | |
| 21 Among remaining phenotypes, 101 are cases and 99 are controls. | |
| 22 --make-bed to plink_output/plink_output.bed + plink_output/plink_output.bim + | |
| 23 plink_output/plink_output.fam ... done. | |
| 24 Pruned 0 variants from chromosome 1, leaving 50. | |
| 25 Pruning complete. 0 of 50 variants removed. | |
| 26 Marker lists written to plink_output/plink_output.prune.in and | |
| 27 plink_output/plink_output.prune.out . | |
| 28 | |
| 29 End time: Tue Sep 15 12:47:24 2020 |