diff test-data/plink_log.txt @ 0:a98caf1d69ab draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/plink commit 555a851b363c015f26d6fcf1f52bcbf3420a0b3b"
author iuc
date Mon, 21 Sep 2020 10:09:22 +0000
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+++ b/test-data/plink_log.txt	Mon Sep 21 10:09:22 2020 +0000
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+PLINK v1.90p 64-bit (16 Jun 2020)
+Options in effect:
+  --bfile plink_input/plink_input
+  --indep-pairwise 50 5 0.2
+  --make-bed
+  --out plink_output/plink_output
+
+Hostname: p-body.local
+Working directory: /private/var/folders/f7/p887fr2x6hd_jg712040rl580000gn/T/tmpzq_so7fd/job_working_directory/000/90/working
+Start time: Tue Sep 15 12:47:24 2020
+
+Random number seed: 1600199244
+32768 MB RAM detected; reserving 16384 MB for main workspace.
+50 variants loaded from .bim file.
+200 people (0 males, 200 females) loaded from .fam.
+200 phenotype values loaded from .fam.
+Using 1 thread (no multithreaded calculations invoked).
+Before main variant filters, 200 founders and 0 nonfounders present.
+Calculating allele frequencies... done.
+50 variants and 200 people pass filters and QC.
+Among remaining phenotypes, 101 are cases and 99 are controls.
+--make-bed to plink_output/plink_output.bed + plink_output/plink_output.bim +
+plink_output/plink_output.fam ... done.
+Pruned 0 variants from chromosome 1, leaving 50.
+Pruning complete.  0 of 50 variants removed.
+Marker lists written to plink_output/plink_output.prune.in and
+plink_output/plink_output.prune.out .
+
+End time: Tue Sep 15 12:47:24 2020