Mercurial > repos > iuc > poretools_qualdist
comparison poretools_qualdist.xml @ 0:44111014e7c1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
| author | iuc |
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| date | Tue, 19 Dec 2017 14:48:28 -0500 |
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| -1:000000000000 | 0:44111014e7c1 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool id="poretools_qualdist" name="Show quality" version="@VERSION@.0"> | |
| 3 <description>score distribution in nanopore sequencing reads</description> | |
| 4 <macros> | |
| 5 <import>macros.xml</import> | |
| 6 </macros> | |
| 7 <expand macro="requirements" /> | |
| 8 <command detect_errors="aggressive"> | |
| 9 <![CDATA[ | |
| 10 poretools qualdist '$input' > '$output' | |
| 11 ]]> | |
| 12 </command> | |
| 13 <inputs> | |
| 14 <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" /> | |
| 15 </inputs> | |
| 16 <outputs> | |
| 17 <data name="output" format="tabular" /> | |
| 18 </outputs> | |
| 19 <tests> | |
| 20 <test> | |
| 21 <expand macro="test_input" /> | |
| 22 <output name="output" file="poretools-qualdist-out1.tabular" ftype="tabular" /> | |
| 23 </test> | |
| 24 <test> | |
| 25 <expand macro="test_input" /> | |
| 26 <output name="output" file="poretools-qualdist-out2.tabular" ftype="tabular" /> | |
| 27 </test> | |
| 28 </tests> | |
| 29 <help> | |
| 30 Get the the quality score composition of a set of FAST5 files. | |
| 31 </help> | |
| 32 <expand macro="citations" /> | |
| 33 </tool> |