Mercurial > repos > iuc > poretools_qualdist
diff poretools_qualdist.xml @ 0:44111014e7c1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
author | iuc |
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date | Tue, 19 Dec 2017 14:48:28 -0500 |
parents | |
children | 72dfdbfab3cc |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/poretools_qualdist.xml Tue Dec 19 14:48:28 2017 -0500 @@ -0,0 +1,33 @@ +<?xml version="1.0"?> +<tool id="poretools_qualdist" name="Show quality" version="@VERSION@.0"> + <description>score distribution in nanopore sequencing reads</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements" /> + <command detect_errors="aggressive"> + <![CDATA[ + poretools qualdist '$input' > '$output' + ]]> + </command> + <inputs> + <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" /> + </inputs> + <outputs> + <data name="output" format="tabular" /> + </outputs> + <tests> + <test> + <expand macro="test_input" /> + <output name="output" file="poretools-qualdist-out1.tabular" ftype="tabular" /> + </test> + <test> + <expand macro="test_input" /> + <output name="output" file="poretools-qualdist-out2.tabular" ftype="tabular" /> + </test> + </tests> + <help> + Get the the quality score composition of a set of FAST5 files. + </help> + <expand macro="citations" /> +</tool>