Mercurial > repos > iuc > poretools_squiggle
comparison macros.xml @ 0:ce8af9373061 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
| author | iuc |
|---|---|
| date | Tue, 19 Dec 2017 14:49:34 -0500 |
| parents | |
| children | 34553d0caa5e |
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| -1:000000000000 | 0:ce8af9373061 |
|---|---|
| 1 <?xml version="1.0"?> | |
| 2 <macros> | |
| 3 <xml name="requirements"> | |
| 4 <requirements> | |
| 5 <requirement type="package" version="@VERSION@">poretools</requirement> | |
| 6 <yield /> | |
| 7 </requirements> | |
| 8 </xml> | |
| 9 <token name="@VERSION@">0.6.1a1</token> | |
| 10 <xml name="citations"> | |
| 11 <citations> | |
| 12 <citation type="doi">10.1093/bioinformatics/btu555</citation> | |
| 13 </citations> | |
| 14 </xml> | |
| 15 <xml name="plot_options"> | |
| 16 <param name="extension" type="select" label="File format for histogram"> | |
| 17 <option value="png">PNG</option> | |
| 18 <option value="pdf">PDF</option> | |
| 19 <option value="svg">SVG</option> | |
| 20 <yield /> | |
| 21 </param> | |
| 22 <param name="theme_bw" argument="--theme-bw" type="boolean" truevalue="--theme-bw" falsevalue="" label="Use a monochrome color scheme" /> | |
| 23 </xml> | |
| 24 <xml name="image_output"> | |
| 25 <data name="output" format="png"> | |
| 26 <change_format> | |
| 27 <when input="extension" value="pdf" format="pdf" /> | |
| 28 <when input="extension" value="svg" format="svg" /> | |
| 29 <yield /> | |
| 30 </change_format> | |
| 31 </data> | |
| 32 </xml> | |
| 33 <xml name="stat_options"> | |
| 34 <param name="type" argument="--type" type="select" label="Filter by type of read"> | |
| 35 <option value="all" selected="true">All</option> | |
| 36 <option value="fwd">Forward reads</option> | |
| 37 <option value="rev">Reverse reads</option> | |
| 38 <option value="fwd,rev">Forward and reverse</option> | |
| 39 <option value="2D">2D</option> | |
| 40 <option value="best">Best</option> | |
| 41 </param> | |
| 42 </xml> | |
| 43 <xml name="test_input"> | |
| 44 <param name="input" ftype="fast5.tar" value="poretools-in1.tar.bz2" /> | |
| 45 </xml> | |
| 46 <xml name="length_options"> | |
| 47 <param name="min_length" argument="--min-length" type="integer" value="0" label="Minimum read length" /> | |
| 48 <param name="max_length" argument="--max-length" type="integer" value="1000000000" label="Maximum read length" /> | |
| 49 </xml> | |
| 50 </macros> |