Mercurial > repos > iuc > poretools_squiggle

diff macros.xml @ 0:ce8af9373061 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
author iuc
date Tue, 19 Dec 2017 14:49:34 -0500
parents
children 34553d0caa5e
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Tue Dec 19 14:49:34 2017 -0500
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+<?xml version="1.0"?>
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@VERSION@">poretools</requirement>
+            <yield />
+        </requirements>
+    </xml>
+    <token name="@VERSION@">0.6.1a1</token>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.1093/bioinformatics/btu555</citation>
+        </citations>
+    </xml>
+    <xml name="plot_options">
+        <param name="extension" type="select" label="File format for histogram">
+            <option value="png">PNG</option>
+            <option value="pdf">PDF</option>
+            <option value="svg">SVG</option>
+            <yield />
+        </param>
+        <param name="theme_bw" argument="--theme-bw" type="boolean" truevalue="--theme-bw" falsevalue="" label="Use a monochrome color scheme" />
+    </xml>
+    <xml name="image_output">
+        <data name="output" format="png">
+            <change_format>
+                <when input="extension" value="pdf" format="pdf" />
+                <when input="extension" value="svg" format="svg" />
+                <yield />
+            </change_format>
+        </data>
+    </xml>
+    <xml name="stat_options">
+        <param name="type" argument="--type" type="select" label="Filter by type of read">
+            <option value="all" selected="true">All</option>
+            <option value="fwd">Forward reads</option>
+            <option value="rev">Reverse reads</option>
+            <option value="fwd,rev">Forward and reverse</option>
+            <option value="2D">2D</option>
+            <option value="best">Best</option>
+        </param>
+    </xml>
+    <xml name="test_input">
+        <param name="input" ftype="fast5.tar" value="poretools-in1.tar.bz2" />
+    </xml>
+    <xml name="length_options">
+        <param name="min_length" argument="--min-length" type="integer" value="0" label="Minimum read length" />
+        <param name="max_length" argument="--max-length" type="integer" value="1000000000" label="Maximum read length" />
+    </xml>
+</macros>