Mercurial > repos > iuc > pygenometracks

annotate test-data/testpyGT.sh @ 15:36b848d5f3ec draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 7df009cda0bc57c6891fc5273b2440db6fcf5719
author iuc
date Tue, 12 Mar 2024 10:28:03 +0000
parents 7dd841a32245
children
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eca03db4f612 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
1 . <(planemo conda_env pyGenomeTracks.xml)
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2824d77cd8f8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
iuc
parents: 8
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2 pgt --tracks test-data/test1.ini --region chrX:3000000-3500000 --fontSize 12 -o test-data/master_TADs_plot.png
2824d77cd8f8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
iuc
parents: 8
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3 pgt --tracks test-data/test2.ini --region chrX:3000000-3500000 --fontSize 12 -o test-data/bigwig_multiple.png
2824d77cd8f8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
iuc
parents: 8
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4 pgt --tracks test-data/test3.ini --region chrX:3000000-3500000 --fontSize 12 -o test-data/master_TADs_BW_plot.png
2824d77cd8f8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
iuc
parents: 8
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5 pgt --tracks test-data/test4.ini --region X:2700000-3100000 --fontSize 12 -o test-data/test_alpha.png
2824d77cd8f8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
iuc
parents: 8
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6 pgt --tracks test-data/test5.ini --region X:3000000-3300000 --fontSize 12 -o test-data/test_gtf_bed4.png
2824d77cd8f8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
iuc
parents: 8
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7 pgt --tracks test-data/test6.ini --region X:2760000-2802000 --fontSize 12 -o test-data/test_narrowPeak.png
2824d77cd8f8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
iuc
parents: 8
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8 pgt --tracks test-data/test7.ini --region chrX:3300000-3500000 --fontSize 12 -o test-data/test_gtf_flybase_param.png
2824d77cd8f8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
iuc
parents: 8
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9 pgt --tracks test-data/test8.ini --region chrX:3300000-3500000 --fontSize 12 -o test-data/test_ucsc_param.png
2824d77cd8f8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
iuc
parents: 8
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10 pgt --tracks test-data/test9.ini --region X:3133000-3138000 --fontSize 12 -o test-data/test_arrowhead_zoom.png
2824d77cd8f8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
iuc
parents: 8
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11 pgt --tracks test-data/test10.ini --region X:3340000-3380000 --fontSize 12 -o test-data/test_middle_triangle.png
2824d77cd8f8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
iuc
parents: 8
diff changeset
12 pgt --tracks test-data/test11.ini --region chrX:3250000-3400000 --fontSize 12 -o test-data/test_TADs_bdgm.png
2824d77cd8f8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
iuc
parents: 8
diff changeset
13 pgt --tracks test-data/test12.ini --region chrX:3000000-3300000 --fontSize 12 -o test-data/test_link.png
2824d77cd8f8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
iuc
parents: 8
diff changeset
14 pgt --tracks test-data/test13.ini --region chrX:3000000-3300000 --fontSize 12 -o test-data/test_link2.png
2824d77cd8f8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
iuc
parents: 8
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15 pgt --tracks test-data/test14.ini --region chrX:3000000-3300000 --fontSize 12 --title "Scale bar" --trackLabelFraction 0.5 --trackLabelHAlign center -o test-data/test_scale_bar.png
2824d77cd8f8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
iuc
parents: 8
diff changeset
16 pgt --tracks test-data/test15.ini --region chrX:3300000-3500000 --fontSize 12 -o test-data/test_tssarrow.png
2824d77cd8f8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
iuc
parents: 8
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17 pgt --tracks test-data/test4.ini --region chrX:2700000-3100000 --fontSize 12 --decreasingXAxis -o test-data/test_alpha_dec.png
2824d77cd8f8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
iuc
parents: 8
diff changeset
18 pgt --tracks test-data/test17.ini --region chr2:73,800,000-75,744,000 --fontSize 12 -o test-data/test_log.png
2824d77cd8f8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
iuc
parents: 8
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19 pgt --tracks test-data/test18.ini --region chrX:2700000-3100000 --fontSize 12 -o test-data/test_operation.png
2824d77cd8f8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
iuc
parents: 8
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20 pgt --tracks test-data/test19.ini --region chr2:73,800,000-75,744,000 --fontSize 12 -o test-data/test_log_grid.png
2824d77cd8f8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
iuc
parents: 8
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21 pgt --tracks test-data/test20.ini --region chrX:3000000-3300000 --fontSize 12 -o test-data/test_arcs_use_middle.png
2824d77cd8f8 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d1b394c8e588a78d1b94e3e57922f7ce684ac835"
iuc
parents: 8
diff changeset
22 pgt --tracks test-data/test21.ini --region X:3000000-3600000 --fontSize 12 --trackLabelFraction 0.3 --plotWidth 12 --dpi 20 -o test-data/master_scale_bar_startend.png
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7dd841a32245 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 9
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23 pgt --tracks test-data/test22.ini --region chrM:10-30 --fontSize 12 -o test-data/master_fasta.png
7dd841a32245 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 9
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24 pgt --tracks test-data/test23.ini --region chrX:3000000-3300000 --fontSize 12 -o test-data/test_matrix_square.png
7dd841a32245 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 9
diff changeset
25 pgt --tracks test-data/test24.ini --region 2:34704975-34705208 --fontSize 12 -o test-data/test_maf.png
7dd841a32245 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
iuc
parents: 9
diff changeset
26 pgt --tracks test-data/test25.ini --region chr2:73,800,000-75,744,000 --fontSize 12 -o test-data/test_vhighlight.png
5
eca03db4f612 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
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27
eca03db4f612 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
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diff changeset
28 conda_env_deactivate