Mercurial > repos > iuc > pygenometracks

diff test-data/testpyGT.sh @ 5:eca03db4f612 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
author iuc
date Wed, 08 Jan 2020 09:15:19 -0500
parents
children 326a3db8d9d1
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/testpyGT.sh	Wed Jan 08 09:15:19 2020 -0500
@@ -0,0 +1,15 @@
+. <(planemo conda_env pyGenomeTracks.xml)
+pgt --tracks test-data/test1.ini --region chrX:3000000-3500000 -o test-data/master_TADs_plot.png
+pgt --tracks test-data/test2.ini --region chrX:3000000-3500000 -o test-data/bigwig_multiple.png
+pgt --tracks test-data/test3.ini --region chrX:3000000-3500000 -o test-data/master_TADs_BW_plot.png
+pgt --tracks test-data/test4.ini --region X:2700000-3100000 -o test-data/test_alpha.png
+pgt --tracks test-data/test5.ini --region X:3000000-3300000 -o test-data/test_gtf_bed4.png
+pgt --tracks test-data/test6.ini --region X:2760000-2802000 -o test-data/test_narrowPeak.png
+pgt --tracks test-data/test7.ini --region chrX:3300000-3500000 -o test-data/test_gtf_flybase_param.png
+pgt --tracks test-data/test8.ini --region chrX:3300000-3500000 -o test-data/test_ucsc_param.png
+pgt --tracks test-data/test9.ini --region X:3133000-3138000 -o test-data/test_arrowhead_zoom.png
+pgt --tracks test-data/test10.ini --region X:3340000-3380000 -o test-data/test_middle_triangle.png
+pgt --tracks test-data/test11.ini --region chrX:3250000-3400000 -o test-data/test_TADs_bdgm.png
+pgt --tracks test-data/test12.ini --region chrX:3000000-3300000 -o test-data/test_link.png
+
+conda_env_deactivate