Mercurial > repos > iuc > pygenometracks

view test-data/testpyGT.sh @ 7:326a3db8d9d1 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d82c81c0900d94b9363379ed4df9a067a058dbd2"
author iuc
date Fri, 17 Apr 2020 11:57:44 -0400
parents eca03db4f612
children 4ac4e7083b7e
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. <(planemo conda_env pyGenomeTracks.xml)
pgt --tracks test-data/test1.ini --region chrX:3000000-3500000 -o test-data/master_TADs_plot.png
pgt --tracks test-data/test2.ini --region chrX:3000000-3500000 -o test-data/bigwig_multiple.png
pgt --tracks test-data/test3.ini --region chrX:3000000-3500000 -o test-data/master_TADs_BW_plot.png
pgt --tracks test-data/test4.ini --region X:2700000-3100000 -o test-data/test_alpha.png
pgt --tracks test-data/test5.ini --region X:3000000-3300000 -o test-data/test_gtf_bed4.png
pgt --tracks test-data/test6.ini --region X:2760000-2802000 -o test-data/test_narrowPeak.png
pgt --tracks test-data/test7.ini --region chrX:3300000-3500000 -o test-data/test_gtf_flybase_param.png
pgt --tracks test-data/test8.ini --region chrX:3300000-3500000 -o test-data/test_ucsc_param.png
pgt --tracks test-data/test9.ini --region X:3133000-3138000 -o test-data/test_arrowhead_zoom.png
pgt --tracks test-data/test10.ini --region X:3340000-3380000 -o test-data/test_middle_triangle.png
pgt --tracks test-data/test11.ini --region chrX:3250000-3400000 -o test-data/test_TADs_bdgm.png
pgt --tracks test-data/test12.ini --region chrX:3000000-3300000 -o test-data/test_link.png
pgt --tracks test-data/test13.ini --region chrX:3000000-3300000 -o test-data/test_link2.png
pgt --tracks test-data/test14.ini --region chrX:3000000-3300000 --title "Scale bar" --trackLabelFraction 0.5 --trackLabelHAlign center -o test-data/test_scale_bar.png
pgt --tracks test-data/test15.ini --region chrX:3300000-3500000 -o test-data/test_tssarrow.png

conda_env_deactivate