Mercurial > repos > iuc > pygenometracks
view test-data/testpyGT.sh @ 8:4ac4e7083b7e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
| author | iuc |
|---|---|
| date | Tue, 21 Jul 2020 03:32:48 -0400 |
| parents | 326a3db8d9d1 |
| children | 2824d77cd8f8 |
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. <(planemo conda_env pyGenomeTracks.xml) # pgt --tracks test-data/test1.ini --region chrX:3000000-3500000 -o test-data/master_TADs_plot.png # pgt --tracks test-data/test2.ini --region chrX:3000000-3500000 -o test-data/bigwig_multiple.png # pgt --tracks test-data/test3.ini --region chrX:3000000-3500000 -o test-data/master_TADs_BW_plot.png # pgt --tracks test-data/test4.ini --region X:2700000-3100000 -o test-data/test_alpha.png # pgt --tracks test-data/test5.ini --region X:3000000-3300000 -o test-data/test_gtf_bed4.png # pgt --tracks test-data/test6.ini --region X:2760000-2802000 -o test-data/test_narrowPeak.png # pgt --tracks test-data/test7.ini --region chrX:3300000-3500000 -o test-data/test_gtf_flybase_param.png # pgt --tracks test-data/test8.ini --region chrX:3300000-3500000 -o test-data/test_ucsc_param.png # pgt --tracks test-data/test9.ini --region X:3133000-3138000 -o test-data/test_arrowhead_zoom.png # pgt --tracks test-data/test10.ini --region X:3340000-3380000 -o test-data/test_middle_triangle.png # pgt --tracks test-data/test11.ini --region chrX:3250000-3400000 -o test-data/test_TADs_bdgm.png # pgt --tracks test-data/test12.ini --region chrX:3000000-3300000 -o test-data/test_link.png # pgt --tracks test-data/test13.ini --region chrX:3000000-3300000 -o test-data/test_link2.png # pgt --tracks test-data/test14.ini --region chrX:3000000-3300000 --title "Scale bar" --trackLabelFraction 0.5 --trackLabelHAlign center -o test-data/test_scale_bar.png # pgt --tracks test-data/test15.ini --region chrX:3300000-3500000 -o test-data/test_tssarrow.png # pgt --tracks test-data/test4.ini --region chrX:2700000-3100000 --decreasingXAxis -o test-data/test_alpha_dec.png # pgt --tracks test-data/test17.ini --region chr2:73,800,000-75,744,000 -o test-data/test_log.png # pgt --tracks test-data/test18.ini --region chrX:2700000-3100000 -o test-data/test_operation.png # pgt --tracks test-data/test19.ini --region chr2:73,800,000-75,744,000 -o test-data/test_log_grid.png pgt --tracks test-data/test20.ini --region chrX:3000000-3300000 -o test-data/test_arcs_use_middle.png conda_env_deactivate