Mercurial > repos > iuc > pygenometracks

comparison test-data/test20.ini @ 8:4ac4e7083b7e draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
author iuc
date Tue, 21 Jul 2020 03:32:48 -0400
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7:326a3db8d9d1 8:4ac4e7083b7e
1 [x-axis]
2 where = top
3
4 [spacer]
5 height = 0.05
6 [hic matrix]
7 file = Li_et_al_2015.h5
8 title = depth = 300000; transform = log1p; min_value = 5 (next track: overlay_previous = share-y links_type = loops)
9 depth = 300000
10 min_value = 5
11 transform = log1p
12 file_type = hic_matrix
13 show_masked_bins = false
14
15 [test arcs overlay]
16 file = test_wide.arcs
17 color = red
18 line_width = 5
19 links_type = loops
20 overlay_previous = share-y
21
22 [test arcs]
23 file = test_wide.arcs
24 line_width = 3
25 color = RdYlGn
26 title = links line_width = 3 color RdYlGn
27 height = 3
28 orientation = inverted
29
30 [spacer]
31 height = 1
32
33 [hic matrix]
34 file = Li_et_al_2015.h5
35 title = depth = 300000; transform = log1p; min_value = 5 (next track: overlay_previous = share-y links_type = loops)
36 depth = 300000
37 min_value = 5
38 transform = log1p
39 file_type = hic_matrix
40 show_masked_bins = false
41
42 [test arcs overlay]
43 file = test_wide.arcs
44 color = red
45 line_width = 5
46 links_type = loops
47 overlay_previous = share-y
48
49 [test arcs]
50 file = test_wide.arcs
51 line_width = 3
52 color = RdYlGn
53 title = links line_width = 3 color RdYlGn use_middle = true
54 use_middle = true
55 height = 3
56 orientation = inverted
57
58 [vlines]
59 file = tad_classification.bed
60 type = vlines
61 line_width = 3