Mercurial > repos > iuc > pygenometracks

comparison test-data/test7.ini @ 11:7dd841a32245 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
author iuc
date Sat, 01 Oct 2022 08:43:22 +0000
parents 326a3db8d9d1
children
comparison
equal deleted inserted replaced
10:a1abfa420d9d 11:7dd841a32245
1 [x-axis] 1 [x-axis]
2 where = top 2 where = top
3 [genes_0_0] 3 [genes_1_0]
4 file = test-data/dm3_genes.bed.gz 4 file = test-data/dm3_subset_BDGP5.78.gtf.gz
5 title = genes 5 prefered_name = transcript_name
6 title = gtf default
6 color = #000000 7 color = #000000
7 border_color = #000000 8 border_color = #000000
8 style = flybase 9 style = flybase
9 height_utr = 1.0 10 height_utr = 1.0
10 color_utr = grey 11 color_utr = grey
12 arrowhead_included = false
13 arrowhead_fraction = 0.004
14 color_backbone = #000000
11 display = stacked 15 display = stacked
12 height = 10.0 16 height = 10.0
13 labels = true 17 labels = true
14 file_type = bed 18 all_labels_inside = false
19 labels_in_margin = false
20 fontstyle = normal
21 file_type = gtf
15 global_max_row = false 22 global_max_row = false
16 max_labels = 60 23 max_labels = 60
17 line_width = 0.5 24 line_width = 0.5
18 arrowhead_included = false
19 overlay_previous = no 25 overlay_previous = no
20 [genes_1_0] 26 [genes_2_0]
21 file = test-data/dm3_subset_BDGP5.78.gtf.gz 27 file = test-data/dm3_subset_BDGP5.78.gtf.gz
22 prefered_name = gene_name 28 prefered_name = gene_name
23 merge_transcripts = true 29 merge_transcripts = true
24 title = gtf 30 merge_overlapping_exons = false
31 title = gtf merge transcripts, use gene_name, red 0.75 UTR
25 color = #000000 32 color = #000000
26 border_color = #000000 33 border_color = #000000
27 style = flybase 34 style = flybase
28 height_utr = 0.75 35 height_utr = 0.75
29 color_utr = #ff0000 36 color_utr = #ff0000
37 arrowhead_included = false
38 arrowhead_fraction = 0.004
39 color_backbone = #000000
30 display = stacked 40 display = stacked
31 height = 10.0 41 height = 10.0
32 labels = true 42 labels = true
33 file_type = bed 43 all_labels_inside = false
44 labels_in_margin = false
45 fontstyle = normal
46 file_type = gtf
34 global_max_row = false 47 global_max_row = false
35 max_labels = 60 48 max_labels = 60
36 line_width = 0.5 49 line_width = 0.5
50 overlay_previous = no
51 [genes_3_0]
52 file = test-data/dm3_subset_BDGP5.78.gtf.gz
53 prefered_name = gene_name
54 merge_transcripts = true
55 merge_overlapping_exons = true
56 title = same but merge overlapping exons
57 color = #000000
58 border_color = #000000
59 style = flybase
60 height_utr = 0.75
61 color_utr = #ff0000
37 arrowhead_included = false 62 arrowhead_included = false
63 arrowhead_fraction = 0.004
64 color_backbone = #000000
65 display = stacked
66 height = 10.0
67 labels = true
68 all_labels_inside = false
69 labels_in_margin = false
70 fontstyle = normal
71 file_type = gtf
72 global_max_row = false
73 max_labels = 60
74 line_width = 0.5
38 overlay_previous = no 75 overlay_previous = no
39 [genes_2_0] 76 [genes_4_0]
40 file = test-data/dm3_genes_withrgbandscore.bed.gz 77 file = test-data/dm3_genes_withrgbandscore.bed.gz
41 title = genes with scores 78 title = genes with scores
42 color = cool_r 79 color = cool_r
43 border_color = #000000 80 border_color = #000000
44 style = flybase 81 style = flybase
45 height_utr = 1.0 82 height_utr = 1.0
46 color_utr = grey 83 color_utr = grey
84 arrowhead_included = false
85 arrowhead_fraction = 0.004
86 color_backbone = #000000
47 display = stacked 87 display = stacked
48 height = 10.0 88 height = 10.0
49 labels = true 89 labels = true
90 all_labels_inside = false
91 labels_in_margin = false
92 fontstyle = normal
50 file_type = bed 93 file_type = bed
51 global_max_row = false 94 global_max_row = false
52 max_labels = 60 95 max_labels = 60
53 line_width = 0.5 96 line_width = 0.5
54 arrowhead_included = false
55 overlay_previous = no 97 overlay_previous = no
56 [genes_3_0] 98 [genes_5_0]
57 file = test-data/dm3_genes_withrgbandscore.bed.gz 99 file = test-data/dm3_genes_withrgbandscore.bed.gz
58 title = genes with utr as bed_rgb 100 title = genes with utr as bed_rgb
59 color = black 101 color = #000000
60 border_color = #000000 102 border_color = #000000
61 style = flybase 103 style = flybase
62 height_utr = 1.0 104 height_utr = 1.0
63 color_utr = bed_rgb 105 color_utr = bed_rgb
106 arrowhead_included = false
107 arrowhead_fraction = 0.004
108 color_backbone = #000000
64 display = stacked 109 display = stacked
65 height = 10.0 110 height = 10.0
66 labels = true 111 labels = true
112 all_labels_inside = false
113 labels_in_margin = false
114 fontstyle = normal
67 file_type = bed 115 file_type = bed
68 global_max_row = false 116 global_max_row = false
69 max_labels = 60 117 max_labels = 60
70 line_width = 0.5 118 line_width = 0.5
71 arrowhead_included = false
72 overlay_previous = no 119 overlay_previous = no
73 [genes_3_0] 120 [genes_6_0]
74 file = test-data/dm3_genes_withrgbandscore.bed.gz 121 file = test-data/dm3_genes_withrgbandscore.bed.gz
75 title = genes with coding as bed_rgb - labels_in_margin 122 title = genes with coding as bed_rgb - labels_in_margin
76 color = bed_rgb 123 color = bed_rgb
77 border_color = #000000 124 border_color = #000000
78 style = flybase 125 style = flybase
79 height_utr = 1.0 126 height_utr = 1.0
80 color_utr = grey 127 color_utr = grey
128 arrowhead_included = false
129 arrowhead_fraction = 0.004
130 color_backbone = #000000
81 display = stacked 131 display = stacked
82 height = 10.0 132 height = 10.0
83 labels = true 133 labels = true
134 all_labels_inside = false
84 labels_in_margin = true 135 labels_in_margin = true
136 fontstyle = normal
85 file_type = bed 137 file_type = bed
86 global_max_row = false 138 global_max_row = false
87 max_labels = 60 139 max_labels = 60
88 line_width = 0.5 140 line_width = 0.5
89 arrowhead_included = false
90 overlay_previous = no 141 overlay_previous = no
91 [genes_4_0] 142 [genes_7_0]
92 file = test-data/dm3_genes_withrgbandscore.bed.gz 143 file = test-data/dm3_genes_withrgbandscore.bed.gz
93 title = genes bed_rgb like - all_labels_inside 144 title = genes bed_rgb like - all_labels_inside
94 color = bed_rgb 145 color = bed_rgb
95 border_color = #000000 146 border_color = #000000
96 style = flybase 147 style = flybase
97 height_utr = 1.0 148 height_utr = 1.0
98 color_utr = bed_rgb 149 color_utr = bed_rgb
150 arrowhead_included = false
151 arrowhead_fraction = 0.004
152 color_backbone = #000000
99 display = stacked 153 display = stacked
100 height = 10.0 154 height = 10.0
101 labels = true 155 labels = true
102 all_labels_inside = true 156 all_labels_inside = true
157 labels_in_margin = false
158 fontstyle = normal
103 file_type = bed 159 file_type = bed
104 global_max_row = false 160 global_max_row = false
105 max_labels = 60 161 max_labels = 60
106 line_width = 0.5 162 line_width = 0.5
107 arrowhead_included = false
108 overlay_previous = no 163 overlay_previous = no