diff test-data/test7.ini @ 11:7dd841a32245 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
author iuc
date Sat, 01 Oct 2022 08:43:22 +0000
parents 326a3db8d9d1
children
line wrap: on
line diff
--- a/test-data/test7.ini	Sun Feb 13 22:43:45 2022 +0000
+++ b/test-data/test7.ini	Sat Oct 01 08:43:22 2022 +0000
@@ -1,42 +1,79 @@
 [x-axis]
 where = top
-[genes_0_0]
-file = test-data/dm3_genes.bed.gz
-title = genes
+[genes_1_0]
+file = test-data/dm3_subset_BDGP5.78.gtf.gz
+prefered_name = transcript_name
+title = gtf default
 color = #000000
 border_color = #000000
 style = flybase
 height_utr = 1.0
 color_utr = grey
+arrowhead_included = false
+arrowhead_fraction = 0.004
+color_backbone = #000000
 display = stacked
 height = 10.0
 labels = true
-file_type = bed
+all_labels_inside = false
+labels_in_margin = false
+fontstyle = normal
+file_type = gtf
 global_max_row = false
 max_labels = 60
 line_width = 0.5
-arrowhead_included = false
 overlay_previous = no
-[genes_1_0]
+[genes_2_0]
 file = test-data/dm3_subset_BDGP5.78.gtf.gz
 prefered_name = gene_name
 merge_transcripts = true
-title = gtf
+merge_overlapping_exons = false
+title = gtf merge transcripts, use gene_name, red 0.75 UTR
 color = #000000
 border_color = #000000
 style = flybase
 height_utr = 0.75
 color_utr = #ff0000
+arrowhead_included = false
+arrowhead_fraction = 0.004
+color_backbone = #000000
 display = stacked
 height = 10.0
 labels = true
-file_type = bed
+all_labels_inside = false
+labels_in_margin = false
+fontstyle = normal
+file_type = gtf
 global_max_row = false
 max_labels = 60
 line_width = 0.5
-arrowhead_included = false
 overlay_previous = no
-[genes_2_0]
+[genes_3_0]
+file = test-data/dm3_subset_BDGP5.78.gtf.gz
+prefered_name = gene_name
+merge_transcripts = true
+merge_overlapping_exons = true
+title = same but merge overlapping exons
+color = #000000
+border_color = #000000
+style = flybase
+height_utr = 0.75
+color_utr = #ff0000
+arrowhead_included = false
+arrowhead_fraction = 0.004
+color_backbone = #000000
+display = stacked
+height = 10.0
+labels = true
+all_labels_inside = false
+labels_in_margin = false
+fontstyle = normal
+file_type = gtf
+global_max_row = false
+max_labels = 60
+line_width = 0.5
+overlay_previous = no
+[genes_4_0]
 file = test-data/dm3_genes_withrgbandscore.bed.gz
 title = genes with scores
 color = cool_r
@@ -44,33 +81,43 @@
 style = flybase
 height_utr = 1.0
 color_utr = grey
+arrowhead_included = false
+arrowhead_fraction = 0.004
+color_backbone = #000000
 display = stacked
 height = 10.0
 labels = true
+all_labels_inside = false
+labels_in_margin = false
+fontstyle = normal
 file_type = bed
 global_max_row = false
 max_labels = 60
 line_width = 0.5
-arrowhead_included = false
 overlay_previous = no
-[genes_3_0]
+[genes_5_0]
 file = test-data/dm3_genes_withrgbandscore.bed.gz
 title = genes with utr as bed_rgb
-color = black
+color = #000000
 border_color = #000000
 style = flybase
 height_utr = 1.0
 color_utr = bed_rgb
+arrowhead_included = false
+arrowhead_fraction = 0.004
+color_backbone = #000000
 display = stacked
 height = 10.0
 labels = true
+all_labels_inside = false
+labels_in_margin = false
+fontstyle = normal
 file_type = bed
 global_max_row = false
 max_labels = 60
 line_width = 0.5
-arrowhead_included = false
 overlay_previous = no
-[genes_3_0]
+[genes_6_0]
 file = test-data/dm3_genes_withrgbandscore.bed.gz
 title = genes with coding as bed_rgb - labels_in_margin
 color = bed_rgb
@@ -78,17 +125,21 @@
 style = flybase
 height_utr = 1.0
 color_utr = grey
+arrowhead_included = false
+arrowhead_fraction = 0.004
+color_backbone = #000000
 display = stacked
 height = 10.0
 labels = true
+all_labels_inside = false
 labels_in_margin = true
+fontstyle = normal
 file_type = bed
 global_max_row = false
 max_labels = 60
 line_width = 0.5
-arrowhead_included = false
 overlay_previous = no
-[genes_4_0]
+[genes_7_0]
 file = test-data/dm3_genes_withrgbandscore.bed.gz
 title = genes bed_rgb like - all_labels_inside
 color = bed_rgb
@@ -96,13 +147,17 @@
 style = flybase
 height_utr = 1.0
 color_utr = bed_rgb
+arrowhead_included = false
+arrowhead_fraction = 0.004
+color_backbone = #000000
 display = stacked
 height = 10.0
 labels = true
 all_labels_inside = true
+labels_in_margin = false
+fontstyle = normal
 file_type = bed
 global_max_row = false
 max_labels = 60
 line_width = 0.5
-arrowhead_included = false
 overlay_previous = no
\ No newline at end of file