Mercurial > repos > iuc > pygenometracks
diff test-data/test7.ini @ 11:7dd841a32245 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
author | iuc |
---|---|
date | Sat, 01 Oct 2022 08:43:22 +0000 |
parents | 326a3db8d9d1 |
children |
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--- a/test-data/test7.ini Sun Feb 13 22:43:45 2022 +0000 +++ b/test-data/test7.ini Sat Oct 01 08:43:22 2022 +0000 @@ -1,42 +1,79 @@ [x-axis] where = top -[genes_0_0] -file = test-data/dm3_genes.bed.gz -title = genes +[genes_1_0] +file = test-data/dm3_subset_BDGP5.78.gtf.gz +prefered_name = transcript_name +title = gtf default color = #000000 border_color = #000000 style = flybase height_utr = 1.0 color_utr = grey +arrowhead_included = false +arrowhead_fraction = 0.004 +color_backbone = #000000 display = stacked height = 10.0 labels = true -file_type = bed +all_labels_inside = false +labels_in_margin = false +fontstyle = normal +file_type = gtf global_max_row = false max_labels = 60 line_width = 0.5 -arrowhead_included = false overlay_previous = no -[genes_1_0] +[genes_2_0] file = test-data/dm3_subset_BDGP5.78.gtf.gz prefered_name = gene_name merge_transcripts = true -title = gtf +merge_overlapping_exons = false +title = gtf merge transcripts, use gene_name, red 0.75 UTR color = #000000 border_color = #000000 style = flybase height_utr = 0.75 color_utr = #ff0000 +arrowhead_included = false +arrowhead_fraction = 0.004 +color_backbone = #000000 display = stacked height = 10.0 labels = true -file_type = bed +all_labels_inside = false +labels_in_margin = false +fontstyle = normal +file_type = gtf global_max_row = false max_labels = 60 line_width = 0.5 -arrowhead_included = false overlay_previous = no -[genes_2_0] +[genes_3_0] +file = test-data/dm3_subset_BDGP5.78.gtf.gz +prefered_name = gene_name +merge_transcripts = true +merge_overlapping_exons = true +title = same but merge overlapping exons +color = #000000 +border_color = #000000 +style = flybase +height_utr = 0.75 +color_utr = #ff0000 +arrowhead_included = false +arrowhead_fraction = 0.004 +color_backbone = #000000 +display = stacked +height = 10.0 +labels = true +all_labels_inside = false +labels_in_margin = false +fontstyle = normal +file_type = gtf +global_max_row = false +max_labels = 60 +line_width = 0.5 +overlay_previous = no +[genes_4_0] file = test-data/dm3_genes_withrgbandscore.bed.gz title = genes with scores color = cool_r @@ -44,33 +81,43 @@ style = flybase height_utr = 1.0 color_utr = grey +arrowhead_included = false +arrowhead_fraction = 0.004 +color_backbone = #000000 display = stacked height = 10.0 labels = true +all_labels_inside = false +labels_in_margin = false +fontstyle = normal file_type = bed global_max_row = false max_labels = 60 line_width = 0.5 -arrowhead_included = false overlay_previous = no -[genes_3_0] +[genes_5_0] file = test-data/dm3_genes_withrgbandscore.bed.gz title = genes with utr as bed_rgb -color = black +color = #000000 border_color = #000000 style = flybase height_utr = 1.0 color_utr = bed_rgb +arrowhead_included = false +arrowhead_fraction = 0.004 +color_backbone = #000000 display = stacked height = 10.0 labels = true +all_labels_inside = false +labels_in_margin = false +fontstyle = normal file_type = bed global_max_row = false max_labels = 60 line_width = 0.5 -arrowhead_included = false overlay_previous = no -[genes_3_0] +[genes_6_0] file = test-data/dm3_genes_withrgbandscore.bed.gz title = genes with coding as bed_rgb - labels_in_margin color = bed_rgb @@ -78,17 +125,21 @@ style = flybase height_utr = 1.0 color_utr = grey +arrowhead_included = false +arrowhead_fraction = 0.004 +color_backbone = #000000 display = stacked height = 10.0 labels = true +all_labels_inside = false labels_in_margin = true +fontstyle = normal file_type = bed global_max_row = false max_labels = 60 line_width = 0.5 -arrowhead_included = false overlay_previous = no -[genes_4_0] +[genes_7_0] file = test-data/dm3_genes_withrgbandscore.bed.gz title = genes bed_rgb like - all_labels_inside color = bed_rgb @@ -96,13 +147,17 @@ style = flybase height_utr = 1.0 color_utr = bed_rgb +arrowhead_included = false +arrowhead_fraction = 0.004 +color_backbone = #000000 display = stacked height = 10.0 labels = true all_labels_inside = true +labels_in_margin = false +fontstyle = normal file_type = bed global_max_row = false max_labels = 60 line_width = 0.5 -arrowhead_included = false overlay_previous = no \ No newline at end of file