Mercurial > repos > iuc > qiime_alpha_diversity

changeset 7:1fa3942bec04 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c"
author iuc
date Thu, 05 Dec 2019 07:57:43 -0500
parents 74b93a664b9e
children
files alpha_diversity.xml macros.xml
diffstat 2 files changed, 4 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/alpha_diversity.xml	Tue Oct 30 19:43:48 2018 -0400
+++ b/alpha_diversity.xml	Thu Dec 05 07:57:43 2019 -0500
@@ -1,4 +1,4 @@
-<tool id="qiime_alpha_diversity" name="Calculate alpha diversity" version="@WRAPPER_VERSION@.0">
+<tool id="qiime_alpha_diversity" name="Calculate alpha diversity" version="@WRAPPER_VERSION@.0" profile="@PROFILE@">
     <description> on each sample in an otu table, using a variety of alpha diversity metrics (alpha_diversity)</description>
     <macros>
         <import>macros.xml</import>
@@ -6,6 +6,7 @@
     <expand macro="requirements"/>
     <version_command>alpha_diversity.py --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
+@MPLBACKEND@
 #set $chosen_metrics = str( $metrics ).split( "," )
 alpha_diversity.py
     --input_path '$input_path'
--- a/macros.xml	Tue Oct 30 19:43:48 2018 -0400
+++ b/macros.xml	Thu Dec 05 07:57:43 2019 -0500
@@ -1,6 +1,8 @@
 <?xml version="1.0" ?>
 <macros>
+    <token name="@PROFILE@">18.01</token>
     <token name="@WRAPPER_VERSION@">1.9.1</token>
+    <token name="@MPLBACKEND@"><![CDATA[export MPLBACKEND=Agg && echo "backend:agg" > matplotlibrc &&]]></token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@WRAPPER_VERSION@">qiime</requirement>