Mercurial > repos > iuc > qiime_collapse_samples

comparison test-data/collapse_samples/collapsed_sum_SampleType_map.txt @ 0:242462fc608b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit d41cdeeec9fd0eb5612df0d5af63a979d1c9ec87
author iuc
date Mon, 10 Jul 2017 16:38:55 -0400
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-1:000000000000 0:242462fc608b
1 #SampleID original-sample-ids BarcodeSequence LinkerPrimerSequence year month day subject replicate-group days_since_epoch Description
2 L_palm (p1, p2) (AACGCACGCTAG, ACACTGTTCATG) GTGCCAGCMGCCGCGGTAA 2008 10 (21, 22) (1, 2) 2 (14173, 14174) (palm1, contains one randomly generated sequence, palm2)
3 Other not16S.1 ATACTATTGCGC GTGCCAGCMGCCGCGGTAA 2008 10 22 1 3 14174 randomly generated sequence plus some variants, these should not map to 16S
4 Tongue (t1, t2) (AGTGAGAGAAGC, ATACTATTGCGC) GTGCCAGCMGCCGCGGTAA 2008 10 (21, 22) 2 2 (14173, 14174) (tongue1, contains one randomly generated sequence, tongue2)
5 feces (f1, f2, f3, f4, f5, f6) (ACACTGTTCATG, ACCAGACGATGC, ACCAGACGATGC, ACCAGACGATGC, ACCAGACGATGC, ACCAGACGATGC) GTGCCAGCMGCCGCGGTAA 2008 10 (22, 23, 23, 23, 23, 23) (1, 1, 2, 2, 1, 1) (1, 1, 1, 1, 2, 2) (14174, 14175, 14175, 14175, 14175, 14175) (fecal1, fecal2, identical sequences to fecal2, all sequences identical, map to GG 295053 at 97 percent id, derived from f3 with some changes to sequences to add one new otu, derived from f4 with some changes to sequences to add one new otu)