Mercurial > repos > iuc > qiime_collapse_samples

diff test-data/collapse_samples/collapsed_sum_SampleType_map.txt @ 0:242462fc608b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit d41cdeeec9fd0eb5612df0d5af63a979d1c9ec87
author iuc
date Mon, 10 Jul 2017 16:38:55 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/collapse_samples/collapsed_sum_SampleType_map.txt	Mon Jul 10 16:38:55 2017 -0400
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+#SampleID	original-sample-ids	BarcodeSequence	LinkerPrimerSequence	year	month	day	subject	replicate-group	days_since_epoch	Description
+L_palm	(p1, p2)	(AACGCACGCTAG, ACACTGTTCATG)	GTGCCAGCMGCCGCGGTAA	2008	10	(21, 22)	(1, 2)	2	(14173, 14174)	(palm1, contains one randomly generated sequence, palm2)
+Other	not16S.1	ATACTATTGCGC	GTGCCAGCMGCCGCGGTAA	2008	10	22	1	3	14174	randomly generated sequence plus some variants, these should not map to 16S
+Tongue	(t1, t2)	(AGTGAGAGAAGC, ATACTATTGCGC)	GTGCCAGCMGCCGCGGTAA	2008	10	(21, 22)	2	2	(14173, 14174)	(tongue1, contains one randomly generated sequence, tongue2)
+feces	(f1, f2, f3, f4, f5, f6)	(ACACTGTTCATG, ACCAGACGATGC, ACCAGACGATGC, ACCAGACGATGC, ACCAGACGATGC, ACCAGACGATGC)	GTGCCAGCMGCCGCGGTAA	2008	10	(22, 23, 23, 23, 23, 23)	(1, 1, 2, 2, 1, 1)	(1, 1, 1, 1, 2, 2)	(14174, 14175, 14175, 14175, 14175, 14175)	(fecal1, fecal2, identical sequences to fecal2, all sequences identical, map to GG 295053 at 97 percent id, derived from f3 with some changes to sequences to add one new otu, derived from f4 with some changes to sequences to add one new otu)
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