Mercurial > repos > iuc > qiime_extract_barcodes

annotate test-data/split_libraries/split_library_log @ 0:c7eeac78cb64 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
author iuc
date Sat, 05 Aug 2017 07:28:39 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
1 Number raw input seqs 8
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
2
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
3 Length outside bounds of 200 and 1000 0
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
4 Num ambiguous bases exceeds limit of 6 0
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
5 Missing Qual Score 0
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
6 Mean qual score below minimum of 25 0
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
7 Max homopolymer run exceeds limit of 6 0
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
8 Num mismatches in primer exceeds limit of 0: 0
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
9
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
10 Sequence length details for all sequences passing quality filters:
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
11 Raw len min/max/avg 244.0/276.0/255.5
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
12 Wrote len min/max/avg 211.0/243.0/222.5
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
13
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
14 Barcodes corrected/not 0/0
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
15 Uncorrected barcodes will not be written to the output fasta file.
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
16 Corrected barcodes will be written with the appropriate barcode category.
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
17 Corrected but unassigned sequences will not be written unless --retain_unassigned_reads is enabled.
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
18
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
19 Total valid barcodes that are not in mapping file 0
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
20 Sequences associated with valid barcodes that are not in the mapping file will not be written.
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
21
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
22 Barcodes in mapping file
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
23 Num Samples 3
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
24 Sample ct min/max/mean: 2 / 4 / 2.67
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
25 Sample Sequence Count Barcode
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
26 PC.634 4 ACAGAGTCGGCT
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
27 PC.354 2 AGCACGAGCCTA
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
28 PC.481 2 ACCAGCGACTAG
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
29 PC.593 0 AGCAGCACTTGT
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
30 PC.636 0 ACGGTGAGTGTC
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
31 PC.635 0 ACCGCAGAGTCA
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
32 PC.356 0 ACAGACCACTCA
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
33 PC.607 0 AACTGTGCGTAC
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
34 PC.355 0 AACTCGTCGATG
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
35
c7eeac78cb64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
iuc
parents:
diff changeset
36 Total number seqs written 8