Mercurial > repos > iuc > quast

comparison test-data/test10_tabular_report.tab @ 14:3061c8b029e5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit b4d6989e1e185120ce470df5c2b0d93330d5e124
author iuc
date Fri, 05 Aug 2022 15:21:27 +0000
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comparison
equal deleted inserted replaced
13:675488238c96 14:3061c8b029e5
1 Assembly contig1 contig2
2 # contigs (>= 0 bp) 3 1
3 # contigs (>= 1000 bp) 3 1
4 Total length (>= 0 bp) 6710 6650
5 Total length (>= 1000 bp) 6710 6650
6 # contigs 3 1
7 Largest contig 3980 6650
8 Total length 6710 6650
9 Reference length - -
10 Estimated reference length - -
11 GC (%) 51.28 52.00
12 Reference GC (%) - -
13 N50 3980 6650
14 NG50 - -
15 N80 1610 6650
16 NG80 - -
17 auN 2934.0 6650.0
18 auNG - -
19 L50 1 1
20 LG50 - -
21 L80 2 1
22 LG80 - -
23 # total reads - -
24 # left - -
25 # right - -
26 Mapped (%) - -
27 Reference mapped (%) - -
28 Properly paired (%) - -
29 Reference properly paired (%) - -
30 Avg. coverage depth - -
31 Reference avg. coverage depth - -
32 Coverage >= 1x (%) - -
33 Reference coverage >= 1x (%) - -
34 # large blocks misassemblies - -
35 # misassemblies - -
36 # misassembled contigs - -
37 Misassembled contigs length - -
38 # local misassemblies - -
39 # scaffold gap ext. mis. - -
40 # scaffold gap loc. mis. - -
41 # structural variations - -
42 # possible TEs - -
43 # unaligned mis. contigs - -
44 # unaligned contigs - -
45 Unaligned length - -
46 Genome fraction (%) - -
47 Duplication ratio - -
48 Avg contig read support - -
49 # N's per 100 kbp 0.00 0.00
50 # mismatches per 100 kbp - -
51 # indels per 100 kbp - -
52 # genomic features - -
53 # operons - -
54 Complete BUSCO (%) - -
55 Partial BUSCO (%) - -
56 # predicted genes (unique) - -
57 # predicted genes (>= 0 bp) - -
58 # predicted genes (>= 300 bp) - -
59 # predicted genes (>= 1500 bp) - -
60 # predicted genes (>= 3000 bp) - -
61 # predicted rRNA genes - -
62 Largest alignment - -
63 Total aligned length - -
64 NA50 - -
65 NGA50 - -
66 NA80 - -
67 NGA80 - -
68 auNA - -
69 auNGA - -
70 LA50 - -
71 LGA50 - -
72 LA80 - -
73 LGA80 - -
74 K-mer-based compl. (%) - -
75 K-mer-based cor. length (%) - -
76 K-mer-based mis. length (%) - -
77 # k-mer-based misjoins - -