Mercurial > repos > iuc > recentrifuge

comparison test-data/kraken_test/test1_csv.log @ 4:12f0968f171c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/recentrifuge commit fbb5d7bb68cbb5f497cdda3c0697b21b046a8262
author iuc
date Thu, 25 Jan 2024 17:02:43 +0000
parents fe733f05c2f8
children
comparison
equal deleted inserted replaced
3:b5407cc2bf51 4:12f0968f171c
1 1
2 =-= /home/pierre/anaconda3/envs/__recentrifuge@1.9.1/bin/rcf =-= v1.9.1 - Jun 2022 =-= by Jose Manuel Martí =-= 2 =-= /home/pierre/miniconda3/envs/__recentrifuge@1.13.2/bin/rcf =-= v1.13.2 - Jan 2024 =-= by Jose Manuel Martí =-=
3 3
4 Kraken .krk files to analyze: ['input_dir/kraken_out.krk'] 4 Kraken .krk files to analyze: ['input_dir/kraken_out.krk']
5 Loading NCBI nodes... OK!  5 Loading NCBI nodes... OK! 
6 Loading NCBI names... OK!  6 Loading NCBI names... OK! 
7 Building dict of parent to children taxa... OK!  7 Building dict of parent to children taxa... OK! 
20  Check for more seqs lost ([in/ex]clude affects)...  20  Check for more seqs lost ([in/ex]clude affects)... 
21 Info: 90 additional seqs discarded (90.909% of accepted) 21 Info: 90 additional seqs discarded (90.909% of accepted)
22  22 
23 Warning! 11 orphan taxids (rerun with --debug for details) 23 Warning! 11 orphan taxids (rerun with --debug for details)
24 input_dir/kraken_out sample OK! 24 input_dir/kraken_out sample OK!
25 Load elapsed time: 0.00392 sec 25 Load elapsed time: 0.00283 sec
26  26 
27  27 
28 Building the taxonomy multiple tree... OK! 28 Building the taxonomy multiple tree... OK!
29 Generating interactive plot (output.rcf.html)... OK! 29 Generating interactive plot (output.rcf.html)... OK!
30 Generating csv extra output ([output.rcf.]*.csv)... OK! 30 Generating csv extra output ([output.rcf.]*.csv)... OK!