view test-data/kraken_test/test1_csv.log @ 1:fe733f05c2f8 draft

planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee
author iuc
date Fri, 26 Aug 2022 10:57:30 +0000
parents 09b7b0b2e2c2
children 12f0968f171c
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=-= /home/pierre/anaconda3/envs/__recentrifuge@1.9.1/bin/rcf =-= v1.9.1 - Jun 2022 =-= by Jose Manuel Martí =-=

Kraken .krk files to analyze: ['input_dir/kraken_out.krk']
Loading NCBI nodes... OK! 
Loading NCBI names... OK! 
Building dict of parent to children taxa... OK! 

Please, wait, processing files in parallel...

Loading output file input_dir/kraken_out.krk... OK!
  Seqs read: 99	[52.81 knt]
  Seqs clas: 99	(0.00% unclassified)
  Seqs pass: 99	(0.00% rejected)
  Scores SHEL: min = 36.0, max = 347.0, avr = 99.9
  Coverage(%): min = 0.2, max = 88.1, avr = 15.4
  Read length: min = 198 nt, max = 602 nt, avr = 533 nt
  TaxIds: by classifier = 13, by filter = 13
Building from raw data with mintaxa = 2 ... 
  Check for more seqs lost ([in/ex]clude affects)... 
  Info: 90 additional seqs discarded (90.909% of accepted)

  Warning! 11 orphan taxids (rerun with --debug for details)
input_dir/kraken_out sample OK!
Load elapsed time: 0.00392 sec


Building the taxonomy multiple tree... OK!
Generating interactive plot (output.rcf.html)... OK!
Generating csv extra output ([output.rcf.]*.csv)... OK!
Total elapsed time: 00:00:00