Mercurial > repos > iuc > recentrifuge
comparison test-data/kraken_test/test1_csv.log @ 1:fe733f05c2f8 draft
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee
| author | iuc |
|---|---|
| date | Fri, 26 Aug 2022 10:57:30 +0000 |
| parents | 09b7b0b2e2c2 |
| children | 12f0968f171c |
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| 0:09b7b0b2e2c2 | 1:fe733f05c2f8 |
|---|---|
| 1 | 1 |
| 2 =-= /home/pierre/anaconda3/envs/__recentrifuge@1.8.1/bin/rcf =-= v1.8.1 - Mar 2022 =-= by Jose Manuel Martà =-= | 2 =-= /home/pierre/anaconda3/envs/__recentrifuge@1.9.1/bin/rcf =-= v1.9.1 - Jun 2022 =-= by Jose Manuel Martà =-= |
| 3 | 3 |
| 4 [90mKraken .krk files to analyze:[0m ['input_dir/kraken_out.krk'] | |
| 4 [90mLoading NCBI nodes...[0m[92m OK! [0m | 5 [90mLoading NCBI nodes...[0m[92m OK! [0m |
| 5 [90mLoading NCBI names...[0m[92m OK! [0m | 6 [90mLoading NCBI names...[0m[92m OK! [0m |
| 6 [90mBuilding dict of parent to children taxa...[0m[92m OK! [0m | 7 [90mBuilding dict of parent to children taxa...[0m[92m OK! [0m |
| 7 [90m | 8 [90m |
| 8 Please, wait, processing files in parallel... | 9 Please, wait, processing files in parallel... |
| 9 [0m | 10 [0m |
| 10 [90mLoading output file /tmp/tmpz5ieggzi/files/d/5/5/dataset_d55a31f8-0f74-4938-9a4f-dce196b7467b.dat... [0m[92mOK! | 11 [90mLoading output file input_dir/kraken_out.krk... [0m[92mOK! |
| 11 [0m[90m Seqs read: [0m99 [90m[[0m52.81 knt[90m] | 12 [0m[90m Seqs read: [0m99 [90m[[0m52.81 knt[90m] |
| 12 [0m[90m Seqs clas: [0m99 [90m([0m0.00%[90m unclassified) | 13 [0m[90m Seqs clas: [0m99 [90m([0m0.00%[90m unclassified) |
| 13 [0m[90m Seqs pass: [0m99 [90m([0m0.00%[90m rejected) | 14 [0m[90m Seqs pass: [0m99 [90m([0m0.00%[90m rejected) |
| 14 [0m[90m Scores SHEL: min = [0m36.0,[90m max = [0m347.0,[90m avr = [0m99.9 | 15 [0m[90m Scores SHEL: min = [0m36.0,[90m max = [0m347.0,[90m avr = [0m99.9 |
| 15 [90m Coverage(%): min = [0m0.2,[90m max = [0m88.1,[90m avr = [0m15.4 | 16 [90m Coverage(%): min = [0m0.2,[90m max = [0m88.1,[90m avr = [0m15.4 |
| 18 [90mBuilding from raw data with mintaxa = [0m2[90m ... | 19 [90mBuilding from raw data with mintaxa = [0m2[90m ... |
| 19 [0m[90m Check for more seqs lost ([in/ex]clude affects)... [0m[94m | 20 [0m[90m Check for more seqs lost ([in/ex]clude affects)... [0m[94m |
| 20 Info:[0m 90 [90madditional seqs discarded ([0m90.909% [90mof accepted) | 21 Info:[0m 90 [90madditional seqs discarded ([0m90.909% [90mof accepted) |
| 21 [0m[93m | 22 [0m[93m |
| 22 Warning![0m 11 orphan taxids[90m (rerun with --debug for details) | 23 Warning![0m 11 orphan taxids[90m (rerun with --debug for details) |
| 23 [0m/tmp/tmpz5ieggzi/files/d/5/5/dataset_d55a31f8-0f74-4938-9a4f-dce196b7467b[94m sample [0m[92mOK! | 24 [0minput_dir/kraken_out[94m sample [0m[92mOK! |
| 24 [0m[90mLoad elapsed time: [0m0.0028[90m sec | 25 [0m[90mLoad elapsed time: [0m0.00392[90m sec |
| 25 [0m | 26 [0m |
| 26 [90m | 27 [90m |
| 27 Building the taxonomy multiple tree... [0m[92mOK![0m | 28 Building the taxonomy multiple tree... [0m[92mOK![0m |
| 28 [90mGenerating interactive plot ([0m[95moutput.rcf.html[0m[90m)... [0m[92mOK![0m | 29 [90mGenerating interactive plot ([0m[95moutput.rcf.html[0m[90m)... [0m[92mOK![0m |
| 29 [90mGenerating csv extra output ([0m[95m[output.rcf.]*.csv[0m[90m)... [0m[92mOK![0m | 30 [90mGenerating csv extra output ([0m[95m[output.rcf.]*.csv[0m[90m)... [0m[92mOK![0m |