comparison test-data/kraken_test/test1_csv.log @ 1:fe733f05c2f8 draft

planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee
author iuc
date Fri, 26 Aug 2022 10:57:30 +0000
parents 09b7b0b2e2c2
children 12f0968f171c
comparison
equal deleted inserted replaced
0:09b7b0b2e2c2 1:fe733f05c2f8
1 1
2 =-= /home/pierre/anaconda3/envs/__recentrifuge@1.8.1/bin/rcf =-= v1.8.1 - Mar 2022 =-= by Jose Manuel Martí =-= 2 =-= /home/pierre/anaconda3/envs/__recentrifuge@1.9.1/bin/rcf =-= v1.9.1 - Jun 2022 =-= by Jose Manuel Martí =-=
3 3
4 Kraken .krk files to analyze: ['input_dir/kraken_out.krk']
4 Loading NCBI nodes... OK!  5 Loading NCBI nodes... OK! 
5 Loading NCBI names... OK!  6 Loading NCBI names... OK! 
6 Building dict of parent to children taxa... OK!  7 Building dict of parent to children taxa... OK! 
7  8 
8 Please, wait, processing files in parallel... 9 Please, wait, processing files in parallel...
9  10 
10 Loading output file /tmp/tmpz5ieggzi/files/d/5/5/dataset_d55a31f8-0f74-4938-9a4f-dce196b7467b.dat... OK! 11 Loading output file input_dir/kraken_out.krk... OK!
11  Seqs read: 99 [52.81 knt] 12  Seqs read: 99 [52.81 knt]
12  Seqs clas: 99 (0.00% unclassified) 13  Seqs clas: 99 (0.00% unclassified)
13  Seqs pass: 99 (0.00% rejected) 14  Seqs pass: 99 (0.00% rejected)
14  Scores SHEL: min = 36.0, max = 347.0, avr = 99.9 15  Scores SHEL: min = 36.0, max = 347.0, avr = 99.9
15  Coverage(%): min = 0.2, max = 88.1, avr = 15.4 16  Coverage(%): min = 0.2, max = 88.1, avr = 15.4
18 Building from raw data with mintaxa = 2 ... 19 Building from raw data with mintaxa = 2 ...
19  Check for more seqs lost ([in/ex]clude affects)...  20  Check for more seqs lost ([in/ex]clude affects)... 
20 Info: 90 additional seqs discarded (90.909% of accepted) 21 Info: 90 additional seqs discarded (90.909% of accepted)
21  22 
22 Warning! 11 orphan taxids (rerun with --debug for details) 23 Warning! 11 orphan taxids (rerun with --debug for details)
23 /tmp/tmpz5ieggzi/files/d/5/5/dataset_d55a31f8-0f74-4938-9a4f-dce196b7467b sample OK! 24 input_dir/kraken_out sample OK!
24 Load elapsed time: 0.0028 sec 25 Load elapsed time: 0.00392 sec
25  26 
26  27 
27 Building the taxonomy multiple tree... OK! 28 Building the taxonomy multiple tree... OK!
28 Generating interactive plot (output.rcf.html)... OK! 29 Generating interactive plot (output.rcf.html)... OK!
29 Generating csv extra output ([output.rcf.]*.csv)... OK! 30 Generating csv extra output ([output.rcf.]*.csv)... OK!