annotate test-data/kraken_test/test1_csv.log @ 1:fe733f05c2f8 draft

planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee
author iuc
date Fri, 26 Aug 2022 10:57:30 +0000
parents 09b7b0b2e2c2
children 12f0968f171c
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
1
1
fe733f05c2f8 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee
iuc
parents: 0
diff changeset
2 =-= /home/pierre/anaconda3/envs/__recentrifuge@1.9.1/bin/rcf =-= v1.9.1 - Jun 2022 =-= by Jose Manuel Martí =-=
0
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
3
1
fe733f05c2f8 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee
iuc
parents: 0
diff changeset
4 Kraken .krk files to analyze: ['input_dir/kraken_out.krk']
0
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
5 Loading NCBI nodes... OK! 
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
6 Loading NCBI names... OK! 
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
7 Building dict of parent to children taxa... OK! 
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
8 
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
9 Please, wait, processing files in parallel...
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
10 
1
fe733f05c2f8 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee
iuc
parents: 0
diff changeset
11 Loading output file input_dir/kraken_out.krk... OK!
0
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
12  Seqs read: 99 [52.81 knt]
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
13  Seqs clas: 99 (0.00% unclassified)
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
14  Seqs pass: 99 (0.00% rejected)
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
15  Scores SHEL: min = 36.0, max = 347.0, avr = 99.9
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
16  Coverage(%): min = 0.2, max = 88.1, avr = 15.4
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
17  Read length: min = 198 nt, max = 602 nt, avr = 533 nt
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
18  TaxIds: by classifier = 13, by filter = 13
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
19 Building from raw data with mintaxa = 2 ...
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
20  Check for more seqs lost ([in/ex]clude affects)... 
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
21 Info: 90 additional seqs discarded (90.909% of accepted)
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
22 
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
23 Warning! 11 orphan taxids (rerun with --debug for details)
1
fe733f05c2f8 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee
iuc
parents: 0
diff changeset
24 input_dir/kraken_out sample OK!
fe733f05c2f8 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee
iuc
parents: 0
diff changeset
25 Load elapsed time: 0.00392 sec
0
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
26 
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
27 
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
28 Building the taxonomy multiple tree... OK!
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
29 Generating interactive plot (output.rcf.html)... OK!
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
30 Generating csv extra output ([output.rcf.]*.csv)... OK!
09b7b0b2e2c2 planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff changeset
31 Total elapsed time: 00:00:00