diff test-data/kraken_test/test1_csv.log @ 0:09b7b0b2e2c2 draft

planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
author iuc
date Mon, 27 Jun 2022 11:03:22 +0000
parents
children fe733f05c2f8
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+++ b/test-data/kraken_test/test1_csv.log	Mon Jun 27 11:03:22 2022 +0000
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+=-= /home/pierre/anaconda3/envs/__recentrifuge@1.8.1/bin/rcf =-= v1.8.1 - Mar 2022 =-= by Jose Manuel Martí =-=
+
+Loading NCBI nodes... OK! 
+Loading NCBI names... OK! 
+Building dict of parent to children taxa... OK! 
+
+Please, wait, processing files in parallel...
+
+Loading output file /tmp/tmpz5ieggzi/files/d/5/5/dataset_d55a31f8-0f74-4938-9a4f-dce196b7467b.dat... OK!
+  Seqs read: 99	[52.81 knt]
+  Seqs clas: 99	(0.00% unclassified)
+  Seqs pass: 99	(0.00% rejected)
+  Scores SHEL: min = 36.0, max = 347.0, avr = 99.9
+  Coverage(%): min = 0.2, max = 88.1, avr = 15.4
+  Read length: min = 198 nt, max = 602 nt, avr = 533 nt
+  TaxIds: by classifier = 13, by filter = 13
+Building from raw data with mintaxa = 2 ... 
+  Check for more seqs lost ([in/ex]clude affects)... 
+  Info: 90 additional seqs discarded (90.909% of accepted)
+
+  Warning! 11 orphan taxids (rerun with --debug for details)
+/tmp/tmpz5ieggzi/files/d/5/5/dataset_d55a31f8-0f74-4938-9a4f-dce196b7467b sample OK!
+Load elapsed time: 0.0028 sec
+
+
+Building the taxonomy multiple tree... OK!
+Generating interactive plot (output.rcf.html)... OK!
+Generating csv extra output ([output.rcf.]*.csv)... OK!
+Total elapsed time: 00:00:00