Mercurial > repos > iuc > reshape2_melt
diff melt.xml @ 0:317ed0ee8bf2 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/reshape2 commit 62172bde663955b6c3cb86dc22c47739824f014a
author | iuc |
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date | Tue, 22 Aug 2017 07:44:24 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/melt.xml Tue Aug 22 07:44:24 2017 -0400 @@ -0,0 +1,59 @@ +<tool id="melt" name="melt" version="@VERSION@"> + <description>collapse combinations of variables:values to single lines</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"></expand> + <command detect_errors="exit_code"><![CDATA[ +cat '$script' && +Rscript '$script' + ]]></command> + <configfiles> + <configfile name="script"><![CDATA[ +## Setup R error handling to go to stderr +options(show.error.messages=F, error=function(){cat(geterrmessage(),file=stderr());q("no",1,F)}) +loc <- Sys.setlocale("LC_MESSAGES", "en_US.UTF-8") + +## Import library +library("reshape2") + +input <- read.csv('$input', sep='\t', header=TRUE) +minput <- melt(input) +write.table(minput, "output.tabular", sep="\t", quote=FALSE, row.names=FALSE) + + ]]></configfile> + </configfiles> + <inputs> + <param name="input" type="data" format="tabular" label="Input should have column headers - these will be the variable IDs that are summarized"/> + + </inputs> + <outputs> + <data name="output" format="tabular" from_work_dir="output.tabular"/> + </outputs> + <tests> + <test> + <param name="input" value="mtcars.txt"/> + <output name="output" file="melt_result1.tabular"/> + </test> + </tests> + <help><![CDATA[ +This tool will apply the melt function of the reshape2 R package. + +The melt function summarizes each unique variable:value combination on a single line. An example can be found here: http://www.statmethods.net/management/reshape.html + + ]]></help> + <citations> + <citation type="bibtex"> +@Article{, + title = {Reshaping Data with the {reshape} Package}, + author = {Hadley Wickham}, + journal = {Journal of Statistical Software}, + year = {2007}, + volume = {21}, + number = {12}, + pages = {1--20}, + url = {http://www.jstatsoft.org/v21/i12/}, + } + </citation> + </citations> +</tool>