Mercurial > repos > iuc > reshape2_melt
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/reshape2 commit 62172bde663955b6c3cb86dc22c47739824f014a
author | iuc |
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date | Tue, 22 Aug 2017 07:44:24 -0400 |
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<tool id="melt" name="melt" version="@VERSION@"> <description>collapse combinations of variables:values to single lines</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"></expand> <command detect_errors="exit_code"><![CDATA[ cat '$script' && Rscript '$script' ]]></command> <configfiles> <configfile name="script"><![CDATA[ ## Setup R error handling to go to stderr options(show.error.messages=F, error=function(){cat(geterrmessage(),file=stderr());q("no",1,F)}) loc <- Sys.setlocale("LC_MESSAGES", "en_US.UTF-8") ## Import library library("reshape2") input <- read.csv('$input', sep='\t', header=TRUE) minput <- melt(input) write.table(minput, "output.tabular", sep="\t", quote=FALSE, row.names=FALSE) ]]></configfile> </configfiles> <inputs> <param name="input" type="data" format="tabular" label="Input should have column headers - these will be the variable IDs that are summarized"/> </inputs> <outputs> <data name="output" format="tabular" from_work_dir="output.tabular"/> </outputs> <tests> <test> <param name="input" value="mtcars.txt"/> <output name="output" file="melt_result1.tabular"/> </test> </tests> <help><![CDATA[ This tool will apply the melt function of the reshape2 R package. The melt function summarizes each unique variable:value combination on a single line. An example can be found here: http://www.statmethods.net/management/reshape.html ]]></help> <citations> <citation type="bibtex"> @Article{, title = {Reshaping Data with the {reshape} Package}, author = {Hadley Wickham}, journal = {Journal of Statistical Software}, year = {2007}, volume = {21}, number = {12}, pages = {1--20}, url = {http://www.jstatsoft.org/v21/i12/}, } </citation> </citations> </tool>