Mercurial > repos > iuc > resize_coordinate_window

diff resize_coordinate_window.xml @ 3:9ba78e8985dc draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/resize_coordinate_window commit ad3846c086321d9bd604e974fd21323347b73470
author iuc
date Mon, 10 Jul 2017 11:47:19 -0400
parents 0164d2edba9f
children 4eb3cc1f8466
line wrap: on
line diff
--- a/resize_coordinate_window.xml	Mon Nov 14 14:04:00 2016 -0500
+++ b/resize_coordinate_window.xml	Mon Jul 10 11:47:19 2017 -0400
@@ -1,16 +1,16 @@
 <tool id="resize_coordinate_window" name="Resize coordinate window" version="1.0.1">
     <description>of GFF data</description>
-    <command>
-        python $__tool_directory__/resize_coordinate_window.py
-        --input "$input"
-        --start_coordinate $start_coordinate
-        --subtract_from_start $subtract_from_start
-        --add_to_end $add_to_end
-        --extend_existing $extend_existing
-        --chrom_len_file ${chromInfo}
-        --region_boundaries $region_boundaries
-        --output "$output"
-    </command>
+    <command detect_errors="exit_code"><![CDATA[
+python '$__tool_directory__/resize_coordinate_window.py'
+--input '$input'
+--start_coordinate $start_coordinate
+--subtract_from_start $subtract_from_start
+--add_to_end $add_to_end
+--extend_existing $extend_existing
+--chrom_len_file '${chromInfo}'
+--region_boundaries $region_boundaries
+--output '$output'
+    ]]></command>
     <inputs>
         <param name="input" type="data" format="gff" label="Gff file" />
         <param name="start_coordinate" type="select" label="Start coordinate" help="Input data is 0-based or 1-based">