Mercurial > repos > iuc > rgrnastar

comparison test-data/test-cache/tophat-test/genomeParameters.txt @ 15:5ec75f5dae3c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit a8e319862d723654c372a6d71e5de76e052586a9"
author iuc
date Wed, 05 Aug 2020 09:40:33 -0400
parents d82339e37e8e
children
comparison
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14:b9e04854e2bb 15:5ec75f5dae3c
1 ### STAR --runMode genomeGenerate --genomeDir test-cache/tophat_test/ --genomeFastaFiles tophat_test.fa --genomeSAindexNbases 5 1 ### STAR --runMode genomeGenerate --genomeDir tempstargenomedir --genomeFastaFiles tools/rgrnastar/test-data/tophat_test.fa --genomeSAindexNbases 5
2 ### GstrandBit 32 2 ### GstrandBit 32
3 versionGenome 2.7.1a 3 versionGenome 2.7.4a
4 genomeFastaFiles tophat_test.fa 4 genomeType Full
5 genomeFastaFiles tools/rgrnastar/test-data/tophat_test.fa
5 genomeSAindexNbases 5 6 genomeSAindexNbases 5
6 genomeChrBinNbits 18 7 genomeChrBinNbits 18
7 genomeSAsparseD 1 8 genomeSAsparseD 1
9 genomeTransformType None
10 genomeTransformVCF -
8 sjdbOverhang 0 11 sjdbOverhang 0
9 sjdbFileChrStartEnd - 12 sjdbFileChrStartEnd -
10 sjdbGTFfile - 13 sjdbGTFfile -
11 sjdbGTFchrPrefix - 14 sjdbGTFchrPrefix -
12 sjdbGTFfeatureExon exon 15 sjdbGTFfeatureExon exon