Mercurial > repos > iuc > samtools_cram_to_bam

comparison samtools_cram_to_bam.xml @ 5:634df184b2a8 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/cram_to_bam commit c5ded4208dd70e88596ddc725795a2401773f02d"
author iuc
date Sat, 27 Nov 2021 12:31:35 +0000
parents 1551b0dd2d16
children 55ae400c0cc4
comparison
equal deleted inserted replaced
4:1551b0dd2d16 5:634df184b2a8
21 #if $parameter_regions.target_region == "regions_bed_file" 21 #if $parameter_regions.target_region == "regions_bed_file"
22 -L '$parameter_regions.regions_bed_file' 22 -L '$parameter_regions.regions_bed_file'
23 #end if 23 #end if
24 -@ \$addthreads 24 -@ \$addthreads
25 -b 25 -b
26 -T '$reffa' 26 -T "\$reffa"
27 -o '$output_alignment' 27 -o '$output_alignment'
28 input.cram 28 input.cram
29 #if $parameter_regions.target_region == "region" 29 #if $parameter_regions.target_region == "region"
30 '$parameter_regions.region_string' 30 '$parameter_regions.region_string'
31 #end if 31 #end if