Mercurial > repos > iuc > samtools_fixmate

changeset 7:84819580b8a5 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/samtools/samtools_fixmate commit 17b880b5009a80a117eb6534bb95cd5795ed0321
author iuc
date Thu, 19 Feb 2026 20:24:52 +0000
parents 68a116f469db
children
files samtools_fixmate.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/samtools_fixmate.xml	Wed Nov 12 13:00:36 2025 +0000
+++ b/samtools_fixmate.xml	Thu Feb 19 20:24:52 2026 +0000
@@ -1,4 +1,4 @@
-<tool id="samtools_fixmate" name="Samtools fixmate" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+<tool id="samtools_fixmate" name="Samtools fixmate" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
     <description>fill mate coordinates, ISIZE and mate related flags</description>
     <macros>
         <import>macros.xml</import>
@@ -31,7 +31,7 @@
             '$output'
     ]]></command>
     <inputs>
-        <param name="bamfile" type="data" format="sam,bam,cram" optional="false" label="Select alignment" help="Set of aligned reads." />
+        <param name="bamfile" type="data" format="sam,unsorted.bam,cram" optional="false" label="Select alignment" help="Set of aligned reads." />
         <param name="remsec" type="boolean" argument="-r" truevalue="-r" falsevalue="" checked="false" label="Remove secondary and unmapped reads" />
         <param name="noprop" type="boolean" argument="-p" truevalue="-p" falsevalue="" checked="false" label="Disable FR proper pair check" />
         <param name="tempcigar" type="boolean" argument="-c" truevalue="-c" falsevalue="" checked="false" label="Add template cigar ct tag" />