Mercurial > repos > iuc > sansa_annotate

comparison macros.xml @ 1:e3862632706d draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit ca0c5ca081608b464ee2698a99b3c5ba31eb58b2"
author iuc
date Fri, 16 Apr 2021 21:32:14 +0000
parents fb00426402b0
children 584c09b1967a
comparison
equal deleted inserted replaced
0:fb00426402b0 1:e3862632706d
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <token name="@TOOL_VERSION@">0.0.7</token> 3 <token name="@TOOL_VERSION@">0.0.8</token>
4 <token name="@VERSION_SUFFIX@">0</token> 4 <token name="@VERSION_SUFFIX@">0</token>
5 <xml name="edam_topics">
6 <edam_topics>
7 <edam_topic>topic_3175</edam_topic>
8 </edam_topics>
9 </xml>
10 <xml name="edam_operations">
11 <edam_operations>
12 <edam_operation>operation_3197</edam_operation>
13 </edam_operations>
14 </xml>
5 <xml name="requirements"> 15 <xml name="requirements">
6 <requirements> 16 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">sansa</requirement> 17 <requirement type="package" version="@TOOL_VERSION@">sansa</requirement>
8 </requirements> 18 </requirements>
9 </xml> 19 </xml>
30 <param argument="--feature" type="text" value="gene" label="Set GTF/GFF3 feature"> 40 <param argument="--feature" type="text" value="gene" label="Set GTF/GFF3 feature">
31 <option value="gene">gene</option> 41 <option value="gene">gene</option>
32 <option value="exon">exon</option> 42 <option value="exon">exon</option>
33 </param> 43 </param>
34 <param argument="--distance" type="integer" min="0" value="1000" label="Set maximum distance" help="0: overlapping features only"/> 44 <param argument="--distance" type="integer" min="0" value="1000" label="Set maximum distance" help="0: overlapping features only"/>
45 <param argument="--contained" type="boolean" truevalue="-c" falsevalue="" label="Report contained genes?" help="Useful for CNVs
46 but potentially long list of genes."/>
35 </section> 47 </section>
36 </xml> 48 </xml>
37 <xml name="s"> 49 <xml name="s">
38 <section name="s" title="SV annotation options" expanded="true"> 50 <section name="s" title="SV annotation options" expanded="true">
39 <param argument="--db" type="data" format="vcf,bcf" label="Select database file"/> 51 <param argument="--db" type="data" format="vcf,bcf" label="Select database file"/>