Mercurial > repos > iuc > sansa_annotate

diff macros.xml @ 1:e3862632706d draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sansa commit ca0c5ca081608b464ee2698a99b3c5ba31eb58b2"
author iuc
date Fri, 16 Apr 2021 21:32:14 +0000
parents fb00426402b0
children 584c09b1967a
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line diff
--- a/macros.xml	Mon Jan 25 17:50:47 2021 +0000
+++ b/macros.xml	Fri Apr 16 21:32:14 2021 +0000
@@ -1,7 +1,17 @@
 <?xml version="1.0"?>
 <macros>
-    <token name="@TOOL_VERSION@">0.0.7</token>
+    <token name="@TOOL_VERSION@">0.0.8</token>
     <token name="@VERSION_SUFFIX@">0</token>
+    <xml name="edam_topics">
+        <edam_topics>
+            <edam_topic>topic_3175</edam_topic>
+        </edam_topics>
+    </xml>
+    <xml name="edam_operations">
+        <edam_operations>
+            <edam_operation>operation_3197</edam_operation>
+        </edam_operations>
+    </xml>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">sansa</requirement>
@@ -32,6 +42,8 @@
                 <option value="exon">exon</option>
             </param>
             <param argument="--distance" type="integer" min="0" value="1000" label="Set maximum distance" help="0: overlapping features only"/>
+            <param argument="--contained" type="boolean" truevalue="-c" falsevalue="" label="Report contained genes?" help="Useful for CNVs
+            but potentially long list of genes."/>
         </section>
     </xml>
     <xml name="s">
@@ -47,4 +59,4 @@
             <param argument="--nomatch" type="boolean" truevalue="-m" falsevalue="" label="Report SVs without match in database?"/>
         </section>
     </xml>
-</macros>
+</macros>
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