Mercurial > repos > iuc > sarscov2summary
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sarscov2summary commit a9dbee25f6ad053c0c9b78f85276c7c839d2ab7a"
| author | iuc |
|---|---|
| date | Mon, 04 May 2020 05:42:35 -0400 |
| parents | |
| children |
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{ "L": 0.0004157193380971021, "MAF": 0.2, "all variant sites": [ { "GAT": 6, "GGT": 5 } ], "aminoacid variant sites": [ { "D": 6, "G": 5 } ], "any variation": 12, "bl": { "MN988713": 0, "MT263436": 0, "MT263450": 0.000240638913757231, "MT263469": 0.0002407048446643332, "MT292570": 0, "MT292573": 0.0002407246536822428, "MT293207": 0.0002405918862548088, "MT345866": 0.0002405886115007371, "MT350282": 0.00024060588962986, "MultiSeq0_24": 0, "MultiSeq1_15": 0, "Node6": 0.0004157193380971021 }, "dN/dS": { "internal": [ [ 17.33115892688824, 1 ] ], "leaves": [ [ 0.1425553249428705, 1 ] ] }, "map": [ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 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1251, 1252, 1253, 1254, 1255, 1256, 1257, 1258, 1259, 1260, 1261, 1262, 1263, 1264, 1265, 1266, 1267, 1268, 1269, 1270, 1271, 1272 ], "p": 0.1, "selection": { "613": { "MAF": 0.38636363636363635, "composition": { "D": 27, "G": 17 }, "fel": 0.01602223362904498, "kind": "positive", "labels": { "MN988713": [ "D", "GAT", 0, 0 ], "MT263436": [ "G", "GGT", 0, 0 ], "MT263450": [ "D", "GAT", 0, 0 ], "MT263469": [ "D", "GAT", 0, 0 ], "MT292570": [ "G", "GGT", 0, 0 ], "MT292573": [ "D", "GAT", 0, 0 ], "MT293207": [ "G", "GGT", 0, 0 ], "MT345866": [ "G", "GGT", 0, 0 ], "MT350282": [ "D", "GAT", 0, 0 ], "MultiSeq0_24": [ "D", "GAT", 0, 0 ], "MultiSeq1_15": [ "G", "GGT", 0, 0 ], "Node12": [ "D", "GAT", 0, 0 ], "Node6": [ "G", "GGT", 1, 0 ] }, "meme": 0.02491607419919761, "meme-branches": 1, "meme-fraction": 0.99999999, "prime": [], "substitutions": [ 0, 1 ], "timing": { "D": [ [ "20200121", "USA", "North America", 1, null, null ], [ "20200324", "USA", "North America", 3, null, null ], [ "20200315", "USA", "North America", 1, null, null ], [ "20200309", "Spain", "Europe", 1, null, null ], [ "20200318", "Brazil", "South America", 1, null, null ], [ "20191230", "China", "Asia", 1, null, null ], [ "20200129", "USA", "North America", 1, null, null ], [ "20200217", "USA", "North America", 2, null, null ], [ "20200122", "Vietnam", "Asia", 1, null, null ], [ "20200304", "Pakistan", "Asia", 1, null, null ], [ "20200312", "USA", "North America", 1, null, null ], [ "20200124", "China", "Asia", 1, null, null ], [ "20200314", "USA", "North America", 1, null, null ], [ "20200313", "USA", "North America", 4, null, null ], [ "20200316", "USA", "North America", 1, null, null ], [ "20200301", "USA", "North America", 2, null, null ], [ "20200321", "USA", "North America", 1, null, null ], [ "20200307", "USA", "North America", 1, null, null ], [ "20200305", "USA", "North America", 1, null, null ], [ "20200319", "USA", "North America", 1, null, null ] ], "G": [ [ "20200324", "USA", "North America", 2, null, null ], [ "20200310", "Spain", "Europe", 1, null, null ], [ "20200319", "USA", "North America", 1, null, null ], [ "20200323", "USA", "North America", 1, null, null ], [ "20200229", "USA", "North America", 1, null, null ], [ "20200330", "USA", "North America", 1, null, null ], [ "20200328", "USA", "North America", 1, null, null ], [ "20200320", "USA", "North America", 1, null, null ], [ "20200321", "USA", "North America", 1, null, null ], [ "20200318", "USA", "North America", 1, null, null ], [ "20200305", "USA", "North America", 1, null, null ], [ "20200325", "USA", "North America", 3, null, null ], [ "20200326", "USA", "North America", 1, null, null ], [ "20200307", "USA", "North America", 1, null, null ] ] }, "trend": 3.578005774935007 } }, "sequences": 11, "sites": 1273, "total sequences": 44, "tree": "(MN988713,MT292573,MT263469,MT350282,MultiSeq0_24,(MT292570,MT293207,MT345866,MT263436,MultiSeq1_15)Node6,MT263450)" }