Mercurial > repos > iuc > scanpy_cluster_reduce_dimension

comparison cluster_reduce_dimension.xml @ 13:6f83f8fd381f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3974c0ff86bb1d6633281f29dfb4c605a74e1e6e
author iuc
date Thu, 14 Mar 2024 15:39:03 +0000
parents 6acb08931836
children 4d8f983cd751
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12:6acb08931836 13:6f83f8fd381f
292 </when> 292 </when>
293 <when value="tl.paga"> 293 <when value="tl.paga">
294 <param argument="groups" type="text" value="louvain" label="Key for categorical in the input" help="You can pass your predefined groups by choosing any categorical annotation of observations ('adata.obs')."> 294 <param argument="groups" type="text" value="louvain" label="Key for categorical in the input" help="You can pass your predefined groups by choosing any categorical annotation of observations ('adata.obs').">
295 <expand macro="sanitize_query" /> 295 <expand macro="sanitize_query" />
296 </param> 296 </param>
297 <param argument="use_rna_velocity" type="boolean" truevalue="False" falsevalue="False" checked="false" label="Use RNA velocity to orient edges in the abstracted graph and estimate transitions?" help="Requires that 'adata.uns' contains a directed single-cell graph with key '['velocyto_transitions']'. This feature might be subject to change in the future."/> 297 <param argument="use_rna_velocity" type="boolean" truevalue="True" falsevalue="False" checked="false" label="Use RNA velocity to orient edges in the abstracted graph and estimate transitions?" help="Requires that 'adata.uns' contains a directed single-cell graph with key '['velocyto_transitions']'. This feature might be subject to change in the future."/>
298 <param argument="model" type="select" label="PAGA connectivity model" help=""> 298 <param argument="model" type="select" label="PAGA connectivity model" help="">
299 <option value="v1.2">v1.2</option> 299 <option value="v1.2">v1.2</option>
300 <option value="v1.0">v1.0</option> 300 <option value="v1.0">v1.0</option>
301 </param> 301 </param>
302 </when> 302 </when>