Mercurial > repos > iuc > scanpy_cluster_reduce_dimension
changeset 13:6f83f8fd381f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3974c0ff86bb1d6633281f29dfb4c605a74e1e6e
| author | iuc |
|---|---|
| date | Thu, 14 Mar 2024 15:39:03 +0000 |
| parents | 6acb08931836 |
| children | 4d8f983cd751 |
| files | cluster_reduce_dimension.xml macros.xml test-data/external.pp.magic.all_genes.krumsiek11.h5ad test-data/external.pp.magic.pca_only.krumsiek11.h5ad |
| diffstat | 4 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/cluster_reduce_dimension.xml Fri Nov 17 09:13:40 2023 +0000 +++ b/cluster_reduce_dimension.xml Thu Mar 14 15:39:03 2024 +0000 @@ -294,7 +294,7 @@ <param argument="groups" type="text" value="louvain" label="Key for categorical in the input" help="You can pass your predefined groups by choosing any categorical annotation of observations ('adata.obs')."> <expand macro="sanitize_query" /> </param> - <param argument="use_rna_velocity" type="boolean" truevalue="False" falsevalue="False" checked="false" label="Use RNA velocity to orient edges in the abstracted graph and estimate transitions?" help="Requires that 'adata.uns' contains a directed single-cell graph with key '['velocyto_transitions']'. This feature might be subject to change in the future."/> + <param argument="use_rna_velocity" type="boolean" truevalue="True" falsevalue="False" checked="false" label="Use RNA velocity to orient edges in the abstracted graph and estimate transitions?" help="Requires that 'adata.uns' contains a directed single-cell graph with key '['velocyto_transitions']'. This feature might be subject to change in the future."/> <param argument="model" type="select" label="PAGA connectivity model" help=""> <option value="v1.2">v1.2</option> <option value="v1.0">v1.0</option>
--- a/macros.xml Fri Nov 17 09:13:40 2023 +0000 +++ b/macros.xml Thu Mar 14 15:39:03 2024 +0000 @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">1.9.6</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@VERSION_SUFFIX@">2</token> <token name="@profile@">22.05</token> <xml name="requirements"> <requirements> @@ -11,6 +11,7 @@ <requirement type="package" version="1.5.3">pandas</requirement> <requirement type="package" version="3.7">matplotlib</requirement> <requirement type="package" version="0.12.2">seaborn</requirement> + <requirement type="package" version="3.0.0">magic-impute</requirement> <yield /> </requirements> </xml>