Mercurial > repos > iuc > scanpy_normalize
annotate macros.xml @ 16:9f354c7c8c92 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 0ef475df22ba51263bb3d1db9f8797c723db35b0
author | iuc |
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date | Tue, 20 Aug 2024 09:52:24 +0000 |
parents | f3ad813a58a3 |
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rev | line source |
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0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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1 <macros> |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
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2 <token name="@TOOL_VERSION@">1.9.6</token> |
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f3ad813a58a3
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit c21958f44b81d740191999fb6015d5ae69538ee0
iuc
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3 <token name="@VERSION_SUFFIX@">4</token> |
14
d844935c906c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 9d49b2a98de059ae9a053dc1c5a23537cf0311de
iuc
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4 <token name="@profile@">21.09</token> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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5 <xml name="requirements"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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6 <requirements> |
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94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
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7 <requirement type="package" version="@TOOL_VERSION@">scanpy</requirement> |
11
c9cb76cf8d6c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit aba2a85f5da6e1094f382d1f0d94c4b8f2544a7d
iuc
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8 <requirement type="package" version="3.0.6">loompy</requirement> |
c9cb76cf8d6c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit aba2a85f5da6e1094f382d1f0d94c4b8f2544a7d
iuc
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9 <requirement type="package" version="0.10.1">leidenalg</requirement> |
c9cb76cf8d6c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit aba2a85f5da6e1094f382d1f0d94c4b8f2544a7d
iuc
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10 <requirement type="package" version="0.8.1">louvain</requirement> |
c9cb76cf8d6c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit aba2a85f5da6e1094f382d1f0d94c4b8f2544a7d
iuc
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11 <requirement type="package" version="1.5.3">pandas</requirement> |
c9cb76cf8d6c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit aba2a85f5da6e1094f382d1f0d94c4b8f2544a7d
iuc
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12 <requirement type="package" version="3.7">matplotlib</requirement> |
c9cb76cf8d6c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit aba2a85f5da6e1094f382d1f0d94c4b8f2544a7d
iuc
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13 <requirement type="package" version="0.12.2">seaborn</requirement> |
13
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3974c0ff86bb1d6633281f29dfb4c605a74e1e6e
iuc
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14 <requirement type="package" version="3.0.0">magic-impute</requirement> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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15 <yield /> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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16 </requirements> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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17 </xml> |
10
ab55fe8030b6
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 806c15e8f3ae7acea300ebeb83222162c42eca14"
iuc
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18 <xml name="bio_tools"> |
ab55fe8030b6
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 806c15e8f3ae7acea300ebeb83222162c42eca14"
iuc
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19 <xrefs> |
ab55fe8030b6
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 806c15e8f3ae7acea300ebeb83222162c42eca14"
iuc
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20 <xref type="bio.tools">scanpy</xref> |
ab55fe8030b6
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 806c15e8f3ae7acea300ebeb83222162c42eca14"
iuc
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21 </xrefs> |
ab55fe8030b6
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 806c15e8f3ae7acea300ebeb83222162c42eca14"
iuc
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22 </xml> |
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c9cb76cf8d6c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit aba2a85f5da6e1094f382d1f0d94c4b8f2544a7d
iuc
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23 <xml name="creators"> |
c9cb76cf8d6c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit aba2a85f5da6e1094f382d1f0d94c4b8f2544a7d
iuc
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24 <creator> |
c9cb76cf8d6c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit aba2a85f5da6e1094f382d1f0d94c4b8f2544a7d
iuc
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25 <organization name="European Galaxy Team" url="https://galaxyproject.org/eu/" /> |
c9cb76cf8d6c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit aba2a85f5da6e1094f382d1f0d94c4b8f2544a7d
iuc
parents:
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26 </creator> |
c9cb76cf8d6c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit aba2a85f5da6e1094f382d1f0d94c4b8f2544a7d
iuc
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27 </xml> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
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28 <xml name="citations"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
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29 <citations> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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30 <citation type="doi">10.1186/s13059-017-1382-0</citation> |
11
c9cb76cf8d6c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit aba2a85f5da6e1094f382d1f0d94c4b8f2544a7d
iuc
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31 <citation type="doi">10.1093/gigascience/giaa102</citation> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
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32 </citations> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
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33 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
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34 <xml name="version_command"> |
1
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
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35 <version_command><![CDATA[python -c "import scanpy as sc;print('scanpy version: %s' % sc.__version__)"]]></version_command> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
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36 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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37 <token name="@CMD@"><![CDATA[ |
1
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
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38 cp '$adata' 'anndata.h5ad' && |
6
3bcd5445cd7a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 5a90fd345b43ca12366f4475f4cfd88ef197e452"
iuc
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39 cat '$script_file' > '$hidden_output' && |
3bcd5445cd7a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 5a90fd345b43ca12366f4475f4cfd88ef197e452"
iuc
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40 python '$script_file' >> '$hidden_output' && |
3bcd5445cd7a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 5a90fd345b43ca12366f4475f4cfd88ef197e452"
iuc
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41 ls . >> '$hidden_output' && |
3bcd5445cd7a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 5a90fd345b43ca12366f4475f4cfd88ef197e452"
iuc
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42 touch 'anndata_info.txt' && |
3bcd5445cd7a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 5a90fd345b43ca12366f4475f4cfd88ef197e452"
iuc
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43 cat 'anndata_info.txt' @CMD_prettify_stdout@ |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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44 ]]> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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45 </token> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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46 <token name="@CMD_imports@"><![CDATA[ |
1
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
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47 import scanpy as sc |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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48 import pandas as pd |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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49 import numpy as np |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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50 ]]> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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51 </token> |
7
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
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52 <xml name="sanitize_query" token_validinitial="string.printable"> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
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53 <sanitizer> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
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54 <valid initial="@VALIDINITIAL@"> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
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55 <remove value="'" /> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
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56 </valid> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
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57 </sanitizer> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
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58 </xml> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
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59 <xml name="sanitize_vectors" token_validinitial="string.digits"> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
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60 <sanitizer> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
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61 <valid initial="@VALIDINITIAL@"> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
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62 <add value=","/> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
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63 </valid> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
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64 </sanitizer> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
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65 </xml> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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66 <xml name="inputs_anndata"> |
1
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
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67 <param name="adata" type="data" format="h5ad" label="Annotated data matrix"/> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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68 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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69 <token name="@CMD_read_inputs@"><![CDATA[ |
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c9cb76cf8d6c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit aba2a85f5da6e1094f382d1f0d94c4b8f2544a7d
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70 adata = sc.read_h5ad('anndata.h5ad') |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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71 ]]> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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72 </token> |
6
3bcd5445cd7a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 5a90fd345b43ca12366f4475f4cfd88ef197e452"
iuc
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73 <xml name="inputs_common_advanced"> |
3bcd5445cd7a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 5a90fd345b43ca12366f4475f4cfd88ef197e452"
iuc
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74 <section name="advanced_common" title="Advanced Options" expanded="false"> |
3bcd5445cd7a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 5a90fd345b43ca12366f4475f4cfd88ef197e452"
iuc
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75 <param name="show_log" type="boolean" checked="false" label="Output Log?" /> |
3bcd5445cd7a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 5a90fd345b43ca12366f4475f4cfd88ef197e452"
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76 </section> |
3bcd5445cd7a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 5a90fd345b43ca12366f4475f4cfd88ef197e452"
iuc
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77 </xml> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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78 <xml name="anndata_outputs"> |
1
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
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79 <data name="anndata_out" format="h5ad" from_work_dir="anndata.h5ad" label="${tool.name} (${method.method}) on ${on_string}: Annotated data matrix"/> |
11
c9cb76cf8d6c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit aba2a85f5da6e1094f382d1f0d94c4b8f2544a7d
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80 <data name="hidden_output" format="txt" label="Log file" > |
6
3bcd5445cd7a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 5a90fd345b43ca12366f4475f4cfd88ef197e452"
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81 <filter>advanced_common['show_log']</filter> |
3bcd5445cd7a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 5a90fd345b43ca12366f4475f4cfd88ef197e452"
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82 </data> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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83 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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84 <token name="@CMD_anndata_write_outputs@"><![CDATA[ |
11
c9cb76cf8d6c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit aba2a85f5da6e1094f382d1f0d94c4b8f2544a7d
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85 adata.write_h5ad('anndata.h5ad') |
6
3bcd5445cd7a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 5a90fd345b43ca12366f4475f4cfd88ef197e452"
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86 with open('anndata_info.txt','w', encoding='utf-8') as ainfo: |
3bcd5445cd7a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 5a90fd345b43ca12366f4475f4cfd88ef197e452"
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87 print(adata, file=ainfo) |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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88 ]]> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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89 </token> |
6
3bcd5445cd7a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 5a90fd345b43ca12366f4475f4cfd88ef197e452"
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90 <token name="@CMD_prettify_stdout@"><![CDATA[ | sed -r '1 s|AnnData object with (.+) = (.*)\s*|\1: \2|g' | sed "s|'||g" | sed -r 's|^\s*(.*):\s(.*)|[\1]\n- \2|g' | sed 's|, |\n- |g' |
3bcd5445cd7a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 5a90fd345b43ca12366f4475f4cfd88ef197e452"
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91 ]]></token> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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92 <xml name="svd_solver"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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93 <param name="svd_solver" type="select" label="SVD solver to use" help=""> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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94 <option value="auto">Automatically chosen depending on the size of the problem</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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95 <option value="arpack">ARPACK wrapper in SciPy</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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96 <option value="randomized">Randomized algorithm due to Halko (2009)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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97 </param> |
ed64c90a9b93
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98 </xml> |
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99 <xml name="pca_random_state"> |
ed64c90a9b93
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100 <param name="random_state" type="integer" value="0" label="Initial states for the optimization" help=""/> |
ed64c90a9b93
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101 </xml> |
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102 <xml name="param_plot_format"> |
ed64c90a9b93
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103 <param name="format" type="select" label="Format for saving figures"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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104 <option value="png">png</option> |
ed64c90a9b93
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105 <option value="pdf">pdf</option> |
ed64c90a9b93
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106 <option value="svg">svg</option> |
ed64c90a9b93
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107 </param> |
ed64c90a9b93
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108 </xml> |
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109 <xml name="numeric_distance_metric_options"> |
ed64c90a9b93
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110 <option value="braycurtis">braycurtis</option> |
ed64c90a9b93
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111 <option value="canberra">canberra</option> |
ed64c90a9b93
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112 <option value="chebyshev">chebyshev</option> |
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113 <option value="cityblock">cityblock</option> |
ed64c90a9b93
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114 <option value="correlation">correlation</option> |
ed64c90a9b93
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115 <option value="cosine">cosine</option> |
ed64c90a9b93
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116 <option value="euclidean" selected="true">euclidean</option> |
ed64c90a9b93
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117 <option value="mahalanobis">mahalanobis</option> |
ed64c90a9b93
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118 <option value="matching">matching</option> |
ed64c90a9b93
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119 <option value="minkowski">minkowski</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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120 <option value="seuclidean">seuclidean</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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121 <option value="sqeuclidean">sqeuclidean</option> |
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122 <option value="wminkowski">wminkowski</option> |
ed64c90a9b93
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123 </xml> |
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124 <xml name="boolean_distance_metric_options"> |
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125 <option value="dice">dice</option> |
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126 <option value="hamming">hamming</option> |
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127 <option value="jaccard">jaccard</option> |
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128 <option value="kulsinski">kulsinski</option> |
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129 <option value="rogerstanimoto">rogerstanimoto</option> |
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130 <option value="russellrao">russellrao</option> |
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131 <option value="sokalmichener">sokalmichener</option> |
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132 <option value="sokalsneath">sokalsneath</option> |
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133 <option value="yule">yule</option> |
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134 </xml> |
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135 <xml name="distance_metric_options"> |
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136 <expand macro="numeric_distance_metric_options"/> |
ed64c90a9b93
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137 <expand macro="boolean_distance_metric_options"/> |
ed64c90a9b93
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138 </xml> |
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139 <xml name="seaborn_color_palette_options"> |
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140 <option value="Accent">Accent</option> |
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141 <option value="Accent_r">Accent_r</option> |
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142 <option value="Blues">Blues</option> |
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143 <option value="Blues_r">Blues_r</option> |
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144 <option value="BrBG">BrBG</option> |
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145 <option value="BrBG_r">BrBG_r</option> |
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146 <option value="BuGn">BuGn</option> |
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147 <option value="BuGn_r">BuGn_r</option> |
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148 <option value="BuPu">BuPu</option> |
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149 <option value="BuPu_r">BuPu_r</option> |
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150 <option value="CMRmap">CMRmap</option> |
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151 <option value="CMRmap_r">CMRmap_r</option> |
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152 <option value="Dark2">Dark2</option> |
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153 <option value="Dark2_r">Dark2_r</option> |
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154 <option value="GnBu">GnBu</option> |
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155 <option value="GnBu_r">GnBu_r</option> |
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156 <option value="Greens">Greens</option> |
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157 <option value="Greens_r">Greens_r</option> |
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158 <option value="Greys">Greys</option> |
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159 <option value="Greys_r">Greys_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
|
160 <option value="OrRd">OrRd</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
161 <option value="OrRd_r">OrRd_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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162 <option value="Oranges">Oranges</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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163 <option value="Oranges_r">Oranges_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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164 <option value="PRGn">PRGn</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
|
165 <option value="PRGn_r">PRGn_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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166 <option value="Paired">Paired</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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167 <option value="Paired_r">Paired_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
|
168 <option value="Pastel1">Pastel1</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
|
169 <option value="Pastel1_r">Pastel1_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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170 <option value="Pastel2">Pastel2</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
|
171 <option value="Pastel2_r">Pastel2_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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172 <option value="PiYG">PiYG</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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173 <option value="PiYG_r">PiYG_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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174 <option value="PuBu">PuBu</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
|
175 <option value="PuBuGn">PuBuGn</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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176 <option value="PuBuGn_r">PuBuGn_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
|
177 <option value="PuBu_r">PuBu_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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178 <option value="PuOr">PuOr</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
|
179 <option value="PuOr_r">PuOr_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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180 <option value="PuRd">PuRd</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
|
181 <option value="PuRd_r">PuRd_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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182 <option value="Purples">Purples</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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183 <option value="Purples_r">Purples_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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184 <option value="RdBu">RdBu</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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185 <option value="RdBu_r">RdBu_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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186 <option value="RdGy">RdGy</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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187 <option value="RdPu">RdPu</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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188 <option value="RdPu_r">RdPu_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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189 <option value="RdYlBu">RdYlBu</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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190 <option value="RdYlBu_r">RdYlBu_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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191 <option value="RdYlGn">RdYlGn</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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192 <option value="RdYlGn_r">RdYlGn_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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193 <option value="Reds">Reds</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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194 <option value="Reds_r">Reds_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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195 <option value="Set1">Set1</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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196 <option value="Set1_r">Set1_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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197 <option value="Set2">Set2</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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198 <option value="Set2_r">Set2_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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199 <option value="Set3">Set3</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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200 <option value="Set3_r">Set3_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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201 <option value="Spectral">Spectral</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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202 <option value="Spectral_r">Spectral_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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203 <option value="Wistia">Wistia</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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204 <option value="Wistia_r">Wistia_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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205 <option value="YlGn">YlGn</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
206 <option value="YlGn_r">YlGn_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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207 <option value="YlGnBu">YlGnBu</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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208 <option value="YlGnBu_r">YlGnBu_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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209 <option value="YlOrBr">YlOrBr</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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210 <option value="YlOrBr_r">YlOrBr_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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211 <option value="YlOrRd">YlOrRd</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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212 <option value="YlOrRd_r">YlOrRd_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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213 <option value="afmhot">afmhot</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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214 <option value="afmhot_r">afmhot_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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215 <option value="autumn">autumn</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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216 <option value="autumn_r">autumn_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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217 <option value="binary">binary</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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218 <option value="binary_r">binary_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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219 <option value="bone">bone</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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220 <option value="bone_r">bone_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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221 <option value="brg">brg</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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222 <option value="brg_r">brg_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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223 <option value="bwr">bwr</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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224 <option value="bwr_r">bwr_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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225 <option value="cividis">cividis</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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226 <option value="cividis_r">cividis_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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227 <option value="cool">cool</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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228 <option value="cool_r">cool_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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229 <option value="coolwarm">coolwarm</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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230 <option value="coolwarm_r">coolwarm_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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231 <option value="copper">copper</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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232 <option value="copper_r">copper_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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233 <option value="cubehelix">cubehelix</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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234 <option value="cubehelix_r">cubehelix_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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235 <option value="flag">flag</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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236 <option value="flag_r">flag_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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237 <option value="gist_earth">gist_earth</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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238 <option value="gist_earth_r">gist_earth_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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239 <option value="gist_gray">gist_gray</option> |
ed64c90a9b93
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240 <option value="gist_gray_r">gist_gray_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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241 <option value="gist_heat">gist_heat</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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242 <option value="gist_heat_r">gist_heat_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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243 <option value="gist_ncar">gist_ncar</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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244 <option value="gist_ncar_r">gist_ncar_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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245 <option value="gist_rainbow">gist_rainbow</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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246 <option value="gist_rainbow_r">gist_rainbow_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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247 <option value="gist_stern">gist_stern</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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248 <option value="gist_stern_r">gist_stern_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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249 <option value="gist_yarg">gist_yarg</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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250 <option value="gist_yarg_r">gist_yarg_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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251 <option value="gnuplot">gnuplot</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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252 <option value="gnuplot_r">gnuplot_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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253 <option value="gnuplot2">gnuplot2</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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254 <option value="gnuplot2_r">gnuplot2_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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255 <option value="gray">gray</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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256 <option value="gray_r">gray_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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257 <option value="hot">hot</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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258 <option value="hot_r">hot_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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259 <option value="hsv">hsv</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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260 <option value="hsv_r">hsv_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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261 <option value="icefire">icefire</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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262 <option value="icefire_r">icefire_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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263 <option value="inferno">inferno</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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264 <option value="inferno_r">inferno_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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265 <option value="jet">jet</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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266 <option value="jet_r">jet_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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267 <option value="magma">magma</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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268 <option value="magma_r">magma_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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269 <option value="mako">mako</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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270 <option value="mako_r">mako_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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271 <option value="nipy_spectral">nipy_spectral</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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272 <option value="nipy_spectral_r">nipy_spectral_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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273 <option value="ocean">ocean</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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274 <option value="ocean_r">ocean_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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275 <option value="pink">pink</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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276 <option value="pink_r">pink_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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277 <option value="plasma">plasma</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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278 <option value="plasma_r">plasma_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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279 <option value="prism">prism</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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280 <option value="prism_r">prism_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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281 <option value="rainbow">rainbow</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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282 <option value="rainbow_r">rainbow_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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283 <option value="rocket">rocket</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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284 <option value="rocket_r">rocket_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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285 <option value="seismic">seismic</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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286 <option value="seismic_r">seismic_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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287 <option value="spring">spring</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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288 <option value="spring_r">spring_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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289 <option value="summer">summer</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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290 <option value="summer_r">summer_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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291 <option value="tab10">tab10</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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292 <option value="tab10_r">tab10_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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293 <option value="tab20">tab20</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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294 <option value="tab20_r">tab20_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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295 <option value="tab20b">tab20b</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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296 <option value="tab20b_r">tab20b_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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297 <option value="tab20c">tab20c</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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298 <option value="tab20c_r">tab20c_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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299 <option value="terrain">terrain</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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300 <option value="terrain_r">terrain_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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301 <option value="twilight">twilight</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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302 <option value="twilight_r">twilight_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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303 <option value="twilight_shifted">twilight_shifted</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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304 <option value="twilight_shifted_r">twilight_shifted_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
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305 <option value="viridis">viridis</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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306 <option value="viridis_r">viridis_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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307 <option value="vlag">vlag</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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308 <option value="vlag_r">vlag_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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309 <option value="winter">winter</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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310 <option value="winter_r">winter_r</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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311 </xml> |
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312 <xml name="matplotlib_pyplot_colormap"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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313 <option value="viridis">viridis (Perceptually Uniform Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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314 <option value="plasma">plasma (Perceptually Uniform Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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315 <option value="inferno">inferno (Perceptually Uniform Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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316 <option value="magma">magma (Perceptually Uniform Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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317 <option value="cividis">cividis (Perceptually Uniform Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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318 <option value="Greys">Greys (Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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319 <option value="Purples">Purples (Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
320 <option value="Blues">Blues (Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
321 <option value="Greens">Greens (Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
322 <option value="Oranges">Oranges (Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
323 <option value="Reds">Reds (Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
324 <option value="YlOrBr">YlOrBr (Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
325 <option value="YlOrRd">YlOrRd (Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
326 <option value="OrRd">OrRd (Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
327 <option value="PuRd">PuRd (Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
328 <option value="RdPu">RdPu (Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
329 <option value="BuPu">BuPu (Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
330 <option value="GnBu">GnBu (Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
331 <option value="PuBu">PuBu (Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
332 <option value="YlGnBu">YlGnBu (Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
333 <option value="PuBuGn">PuBuGn (Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
334 <option value="BuGn">BuGn (Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
335 <option value="YlGn">YlGn (Sequential)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
336 <option value="binary">binary (Sequential 2)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
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337 <option value="gist_yarg">gist_yarg (Sequential 2)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
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338 <option value="gist_gray">gist_gray (Sequential 2)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
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339 <option value="gray">gray (Sequential 2)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
340 <option value="bone">bone (Sequential 2)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
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341 <option value="pink">pink (Sequential 2)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
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342 <option value="spring">spring (Sequential 2)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
343 <option value="summer">summer (Sequential 2)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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344 <option value="autumn">autumn (Sequential 2)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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345 <option value="winter">winter (Sequential 2)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
346 <option value="cool">cool (Sequential 2)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
347 <option value="Wistia">Wistia (Sequential 2)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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348 <option value="hot">hot (Sequential 2)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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349 <option value="afmhot">afmhot (Sequential 2)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
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350 <option value="gist_heat">gist_heat (Sequential 2)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
351 <option value="copper">copper (Sequential 2)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
352 <option value="PiYG">PiYG (Diverging)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
353 <option value="PRGn">PRGn (Diverging)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
354 <option value="BrBG">BrBG (Diverging)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
355 <option value="PuOr">PuOr (Diverging)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
356 <option value="RdGy">RdGy (Diverging)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
357 <option value="RdBu">RdBu (Diverging)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
358 <option value="RdYlBu">RdYlBu (Diverging)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
359 <option value="RdYlGn">RdYlGn (Diverging)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
360 <option value="Spectral">Spectral (Diverging)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
361 <option value="coolwarm">coolwarm (Diverging)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
362 <option value="bwr">bwr (Diverging)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
363 <option value="seismic">seismic (Diverging)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
364 <option value="twilight">twilight (Cyclic)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
365 <option value="twilight_shifted">twilight_shifted (Cyclic)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
366 <option value="hsv">hsv (Cyclic)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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367 <option value="Pastel1">Pastel1 (Qualitative)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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368 <option value="Pastel2">Pastel2 (Qualitative)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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369 <option value="Paired">Paired (Qualitative)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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370 <option value="Accent">Accent (Qualitative)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
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371 <option value="Dark2">Dark2 (Qualitative)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
372 <option value="Set1">Set1 (Qualitative)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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373 <option value="Set2">Set2 (Qualitative)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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374 <option value="Set3">Set3 (Qualitative)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
375 <option value="tab10">tab10 (Qualitative)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
376 <option value="tab20">tab20 (Qualitative)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
377 <option value="tab20b">tab20b (Qualitative)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
378 <option value="tab20c">tab20c (Qualitative)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
379 <option value="flag">flag (Miscellaneous)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
380 <option value="prism">prism (Miscellaneous)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
381 <option value="ocean">ocean (Miscellaneous)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
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382 <option value="gist_earth">gist_earth (Miscellaneous)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
383 <option value="terrain">terrain (Miscellaneous)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
384 <option value="gist_stern">gist_stern (Miscellaneous)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
385 <option value="gnuplot">gnuplot (Miscellaneous)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
386 <option value="gnuplot2">gnuplot2 (Miscellaneous)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
387 <option value="CMRmap">CMRmap (Miscellaneous)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
388 <option value="cubehelix">cubehelix (Miscellaneous)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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389 <option value="brg">brg (Miscellaneous)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
390 <option value="gist_rainbow">gist_rainbow (Miscellaneous)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
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391 <option value="rainbow">rainbow (Miscellaneous)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
392 <option value="jet">jet (Miscellaneous)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
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393 <option value="nipy_spectral">nipy_spectral (Miscellaneous)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
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394 <option value="gist_ncar">gist_ncar (Miscellaneous)</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
395 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
396 <xml name="param_groupby"> |
7
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
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|
397 <param argument="groupby" type="text" value="" optional="true" label="The key of the observation grouping to consider" help="If it is given, the plot is ordered by the respective group. It is expected that to be a categorical. If it is not a categorical observation, it would be subdivided into 'num_categories'."> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
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398 <expand macro="sanitize_query" /> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
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399 </param> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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parents:
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changeset
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400 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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changeset
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401 <xml name="param_use_raw"> |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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402 <param argument="use_raw" type="boolean" truevalue="True" falsevalue="False" checked="false" label="Use 'raw' attribute of input if present" help=""/> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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changeset
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403 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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changeset
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404 <xml name="param_log"> |
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a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
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405 <param argument="log" type="boolean" truevalue="True" falsevalue="False" checked="false" label="Use the log of the values?"/> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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parents:
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changeset
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406 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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407 <xml name="pl_figsize"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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changeset
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408 <conditional name="figsize"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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409 <param name="test" type="select" label="Custom figure size" > |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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410 <option value="yes">Yes</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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changeset
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411 <option value="no" selected="true">No: the figure width is set based on the number of variable names and the height is set to 10.</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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412 </param> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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413 <when value="yes"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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414 <param argument="width" type="integer" min="0" value="10" label="Figure width" help=""/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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415 <param argument="height" type="integer" min="0" value="10" label="Figure height" help=""/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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416 </when> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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417 <when value="no"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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418 </conditional> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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419 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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420 <token name="@CMD_params_figsize@"><![CDATA[ |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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421 |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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422 ]]></token> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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423 <xml name="pl_var_names"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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424 <conditional name="var_names"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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425 <param name="type" type="select" label="Variables to plot (columns of the heatmaps)" > |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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426 <option value="all">All variables in 'adata.var_names'</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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427 <option value="custom">Subset of variables in 'adata.var_names'</option> |
15
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit c21958f44b81d740191999fb6015d5ae69538ee0
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428 <option value="customfile">Subset of variables as a tabular file</option> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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429 </param> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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430 <when value="all"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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431 <when value="custom"> |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
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432 <param argument="var_names" type="text" value="" label="List of variables to plot" help="They should be a valid subset of 'adata.var_names', and separated by comma"> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
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433 <expand macro="sanitize_query" /> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
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434 </param> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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435 </when> |
15
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit c21958f44b81d740191999fb6015d5ae69538ee0
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436 <when value="customfile"> |
f3ad813a58a3
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit c21958f44b81d740191999fb6015d5ae69538ee0
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437 <param argument="var_names" type="data" format="tabular" label="List of variables to plot" help="This should be a tsv where row = group (e.g. celltypes) and columns = variables."></param> |
16
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 0ef475df22ba51263bb3d1db9f8797c723db35b0
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438 <param name="header" type="select" label="Header in the list of markers?"> |
9f354c7c8c92
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 0ef475df22ba51263bb3d1db9f8797c723db35b0
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439 <option value="included">Header incldued</option> |
9f354c7c8c92
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 0ef475df22ba51263bb3d1db9f8797c723db35b0
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440 <option value="not_included">Header not included</option> |
9f354c7c8c92
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 0ef475df22ba51263bb3d1db9f8797c723db35b0
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441 </param> |
15
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit c21958f44b81d740191999fb6015d5ae69538ee0
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442 </when> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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443 </conditional> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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444 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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445 <xml name="param_num_categories"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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446 <param argument="num_categories" type="integer" min="0" value="7" label="Number of categories" help="It is only used if groupby observation is not categorical. This value determines the number of groups into which the groupby observation should be subdivided."/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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447 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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448 <xml name="param_dendrogram"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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449 <param argument="dendrogram" type="boolean" truevalue="True" falsevalue="False" checked="false" label="Compute and plot a dendrogram?" help="groupby categories are reordered accoring to the dendrogram order. If groups of var_names are set and those groups correspond to the groupby categories, those groups are also reordered. The ‘person’ method is used to compute the pairwise correlation between categories using all var_names in raw if use_raw is None, otherwise all adata.var_names are used. The linkage method used is complete."/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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450 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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451 <xml name="pl_var_group_positions"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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452 <repeat name="var_group_positions" title="Group of variables to highlight" help="This will draw a 'bracket' on top of the plot between the given start and end positions. If a label is given, it will be added on top of the bracket. "> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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453 <param name="start" type="integer" min="0" value="" label="Start" help=""/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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454 <param name="end" type="integer" min="0" value="" label="End" help=""/> |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
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455 <param argument="label" type="text" value="" label="Label" help=""> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
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456 <expand macro="sanitize_query" /> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
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457 </param> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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458 </repeat> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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459 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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460 <xml name="param_var_group_rotation"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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461 <param argument="var_group_rotation" type="float" value="" optional="true" label="Label rotation degrees" help="By default, labels larger than 4 characters are rotated 90 degrees"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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462 </xml> |
ed64c90a9b93
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463 <xml name="param_layer"> |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
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464 <param argument="layer" type="text" value="" label="Name of the AnnData object layer that wants to be plotted" help="By default 'adata.raw.X' is plotted. If 'use_raw=False' is set, then 'adata.X' is plotted. If layer is set to a valid layer name, then the layer is plotted. layer takes precedence over 'use_raw'."> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
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465 <expand macro="sanitize_query" /> |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
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466 </param> |
0
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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467 </xml> |
ed64c90a9b93
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468 <token name="@CMD_param_plot_inputs@"><![CDATA[ |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
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469 adata, |
0
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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470 save='.$format', |
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471 show=False, |
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472 ]]></token> |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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473 <xml name="params_inputs"> |
0
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474 <expand macro="pl_var_names"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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475 <expand macro="param_groupby"/> |
ed64c90a9b93
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476 <expand macro="param_num_categories"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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changeset
|
477 </xml> |
16
9f354c7c8c92
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 0ef475df22ba51263bb3d1db9f8797c723db35b0
iuc
parents:
15
diff
changeset
|
478 <token name="@CMD_var_names_header_check@"><![CDATA[ |
9f354c7c8c92
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 0ef475df22ba51263bb3d1db9f8797c723db35b0
iuc
parents:
15
diff
changeset
|
479 header='infer' |
9f354c7c8c92
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 0ef475df22ba51263bb3d1db9f8797c723db35b0
iuc
parents:
15
diff
changeset
|
480 #if $method.var_names.type == 'customfile' and $method.var_names.header == 'not_included' : |
9f354c7c8c92
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 0ef475df22ba51263bb3d1db9f8797c723db35b0
iuc
parents:
15
diff
changeset
|
481 header=None |
9f354c7c8c92
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 0ef475df22ba51263bb3d1db9f8797c723db35b0
iuc
parents:
15
diff
changeset
|
482 #end if |
9f354c7c8c92
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 0ef475df22ba51263bb3d1db9f8797c723db35b0
iuc
parents:
15
diff
changeset
|
483 ]]></token> |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
484 <token name="@CMD_params_inputs@"><![CDATA[ |
15
f3ad813a58a3
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit c21958f44b81d740191999fb6015d5ae69538ee0
iuc
parents:
14
diff
changeset
|
485 #if $method.var_names.type == 'custom' |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
486 #set $var_names = ([x.strip() for x in str($method.var_names.var_names).split(',')]) |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
487 var_names=$var_names, |
15
f3ad813a58a3
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit c21958f44b81d740191999fb6015d5ae69538ee0
iuc
parents:
14
diff
changeset
|
488 #else if $method.var_names.type == 'customfile' |
f3ad813a58a3
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit c21958f44b81d740191999fb6015d5ae69538ee0
iuc
parents:
14
diff
changeset
|
489 var_names={key: [v for v in list(value.values()) if pd.notna(v)] for key, value in pd.read_csv('$var_names', sep='\t', index_col=0).to_dict(orient='index').items()}, |
f3ad813a58a3
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit c21958f44b81d740191999fb6015d5ae69538ee0
iuc
parents:
14
diff
changeset
|
490 #else |
f3ad813a58a3
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit c21958f44b81d740191999fb6015d5ae69538ee0
iuc
parents:
14
diff
changeset
|
491 var_names=adata.var_names, |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
492 #end if |
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
493 #if $method.groupby |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
494 groupby='$method.groupby', |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
495 #end if |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
496 num_categories=$method.num_categories, |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
497 ]]></token> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
498 <xml name="params_plots"> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
499 <expand macro="param_log"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
500 <expand macro="param_use_raw"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
501 <expand macro="param_dendrogram"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
502 <expand macro="pl_var_group_positions"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
503 <expand macro="param_var_group_rotation"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
504 <expand macro="pl_figsize"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
505 <expand macro="param_layer"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
506 </xml> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
507 <token name="@CMD_params_plots@"><![CDATA[ |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
508 log=$method.log, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
509 use_raw=$method.use_raw, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
510 dendrogram=$method.dendrogram, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
511 #if len($method.var_group_positions) > 0: |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
512 #set $var_group_positions=[] |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
513 #set $var_group_labels=[] |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
514 #for $i, $s in enumerate($method.var_group_positions) |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
515 #silent $var_group_positions.append((int($s.start), int($s.end))) |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
516 #silent $var_group_labels.append(str($s.label)) |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
517 #end for |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
518 var_group_positions=$var_group_positions, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
519 var_group_labels=$var_group_labels, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
520 #end if |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
521 #if str($method.var_group_rotation) != '' |
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
522 var_group_rotation=$method.var_group_rotation, |
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
523 #end if |
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
524 #if $method.figsize.test == 'yes' |
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
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525 figsize=($method.figsize.width, $method.figsize.height), |
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
526 #end if |
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
527 #if $method.layer |
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
528 layer='$method.layer', |
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
529 #end if |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
530 ]]></token> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
531 <xml name="matplotlib_color"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
532 <option value="AliceBlue">AliceBlue</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
533 <option value="AntiqueWhite">AntiqueWhite</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
534 <option value="Aqua">Aqua</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
535 <option value="Aquamarine">Aquamarine</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
536 <option value="Azure">Azure</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
537 <option value="Beige">Beige</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
538 <option value="Bisque">Bisque</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
539 <option value="Black">Black</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
540 <option value="BlanchedAlmond">BlanchedAlmond</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
541 <option value="Blue">Blue</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
542 <option value="BlueViolet">BlueViolet</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
543 <option value="Brown">Brown</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
544 <option value="BurlyWood">BurlyWood</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
545 <option value="CadetBlue">CadetBlue</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
546 <option value="Chartreuse">Chartreuse</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
547 <option value="Chocolate">Chocolate</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
548 <option value="Coral">Coral</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
549 <option value="CornflowerBlue">CornflowerBlue</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
550 <option value="Cornsilk">Cornsilk</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
551 <option value="Crimson">Crimson</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
552 <option value="Cyan">Cyan</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
553 <option value="DarkBlue">DarkBlue</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
554 <option value="DarkCyan">DarkCyan</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
555 <option value="DarkGoldenRod">DarkGoldenRod</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
556 <option value="DarkGray">DarkGray</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
557 <option value="DarkGrey">DarkGrey</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
558 <option value="DarkGreen">DarkGreen</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
559 <option value="DarkKhaki">DarkKhaki</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
560 <option value="DarkMagenta">DarkMagenta</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
561 <option value="DarkOliveGreen">DarkOliveGreen</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
562 <option value="DarkOrange">DarkOrange</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
563 <option value="DarkOrchid">DarkOrchid</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
564 <option value="DarkRed">DarkRed</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
565 <option value="DarkSalmon">DarkSalmon</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
566 <option value="DarkSeaGreen">DarkSeaGreen</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
567 <option value="DarkSlateBlue">DarkSlateBlue</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
568 <option value="DarkSlateGray">DarkSlateGray</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
569 <option value="DarkSlateGrey">DarkSlateGrey</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
570 <option value="DarkTurquoise">DarkTurquoise</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
571 <option value="DarkViolet">DarkViolet</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
572 <option value="DeepPink">DeepPink</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
573 <option value="DeepSkyBlue">DeepSkyBlue</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
574 <option value="DimGray">DimGray</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
575 <option value="DimGrey">DimGrey</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
576 <option value="DodgerBlue">DodgerBlue</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
577 <option value="FireBrick">FireBrick</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
578 <option value="FloralWhite">FloralWhite</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
579 <option value="ForestGreen">ForestGreen</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
580 <option value="Fuchsia">Fuchsia</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
581 <option value="Gainsboro">Gainsboro</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
582 <option value="GhostWhite">GhostWhite</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
583 <option value="Gold">Gold</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
584 <option value="GoldenRod">GoldenRod</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
585 <option value="Gray">Gray</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
586 <option value="Grey">Grey</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
587 <option value="Green">Green</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
588 <option value="GreenYellow">GreenYellow</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
589 <option value="HoneyDew">HoneyDew</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
590 <option value="HotPink">HotPink</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
591 <option value="IndianRed">IndianRed</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
592 <option value="Indigo">Indigo</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
593 <option value="Ivory">Ivory</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
594 <option value="Khaki">Khaki</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
595 <option value="Lavender">Lavender</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
596 <option value="LavenderBlush">LavenderBlush</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
597 <option value="LawnGreen">LawnGreen</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
598 <option value="LemonChiffon">LemonChiffon</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
599 <option value="LightBlue">LightBlue</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
600 <option value="LightCoral">LightCoral</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
601 <option value="LightCyan">LightCyan</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
602 <option value="LightGoldenRodYellow">LightGoldenRodYellow</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
603 <option value="LightGray">LightGray</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
604 <option value="LightGrey">LightGrey</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
605 <option value="LightGreen">LightGreen</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
606 <option value="LightPink">LightPink</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
607 <option value="LightSalmon">LightSalmon</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
608 <option value="LightSeaGreen">LightSeaGreen</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
609 <option value="LightSkyBlue">LightSkyBlue</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
610 <option value="LightSlateGray">LightSlateGray</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
611 <option value="LightSlateGrey">LightSlateGrey</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
612 <option value="LightSteelBlue">LightSteelBlue</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
613 <option value="LightYellow">LightYellow</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
614 <option value="Lime">Lime</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
615 <option value="LimeGreen">LimeGreen</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
616 <option value="Linen">Linen</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
617 <option value="Magenta">Magenta</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
618 <option value="Maroon">Maroon</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
619 <option value="MediumAquaMarine">MediumAquaMarine</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
620 <option value="MediumBlue">MediumBlue</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
621 <option value="MediumOrchid">MediumOrchid</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
622 <option value="MediumPurple">MediumPurple</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
623 <option value="MediumSeaGreen">MediumSeaGreen</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
624 <option value="MediumSlateBlue">MediumSlateBlue</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
625 <option value="MediumSpringGreen">MediumSpringGreen</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
626 <option value="MediumTurquoise">MediumTurquoise</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
627 <option value="MediumVioletRed">MediumVioletRed</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
628 <option value="MidnightBlue">MidnightBlue</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
629 <option value="MintCream">MintCream</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
630 <option value="MistyRose">MistyRose</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
631 <option value="Moccasin">Moccasin</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
632 <option value="NavajoWhite">NavajoWhite</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
633 <option value="Navy">Navy</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
634 <option value="OldLace">OldLace</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
635 <option value="Olive">Olive</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
636 <option value="OliveDrab">OliveDrab</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
637 <option value="Orange">Orange</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
638 <option value="OrangeRed">OrangeRed</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
639 <option value="Orchid">Orchid</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
640 <option value="PaleGoldenRod">PaleGoldenRod</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
641 <option value="PaleGreen">PaleGreen</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
642 <option value="PaleTurquoise">PaleTurquoise</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
643 <option value="PaleVioletRed">PaleVioletRed</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
644 <option value="PapayaWhip">PapayaWhip</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
645 <option value="PeachPuff">PeachPuff</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
646 <option value="Peru">Peru</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
647 <option value="Pink">Pink</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
648 <option value="Plum">Plum</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
649 <option value="PowderBlue">PowderBlue</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
650 <option value="Purple">Purple</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
651 <option value="RebeccaPurple">RebeccaPurple</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
652 <option value="Red">Red</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
653 <option value="RosyBrown">RosyBrown</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
654 <option value="RoyalBlue">RoyalBlue</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
655 <option value="SaddleBrown">SaddleBrown</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
656 <option value="Salmon">Salmon</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
657 <option value="SandyBrown">SandyBrown</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
658 <option value="SeaGreen">SeaGreen</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
659 <option value="SeaShell">SeaShell</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
660 <option value="Sienna">Sienna</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
661 <option value="Silver">Silver</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
662 <option value="SkyBlue">SkyBlue</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
663 <option value="SlateBlue">SlateBlue</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
664 <option value="SlateGray">SlateGray</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
665 <option value="SlateGrey">SlateGrey</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
666 <option value="Snow">Snow</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
667 <option value="SpringGreen">SpringGreen</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
668 <option value="SteelBlue">SteelBlue</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
669 <option value="Tan">Tan</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
670 <option value="Teal">Teal</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
671 <option value="Thistle">Thistle</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
672 <option value="Tomato">Tomato</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
673 <option value="Turquoise">Turquoise</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
674 <option value="Violet">Violet</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
675 <option value="Wheat">Wheat</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
676 <option value="White">White</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
677 <option value="WhiteSmoke">WhiteSmoke</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
678 <option value="Yellow">Yellow</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
679 <option value="YellowGreen">YellowGreen</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
680 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
681 <xml name="param_matplotlib_pyplot_edgecolors"> |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
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parents:
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diff
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682 <param argument="edgecolors" type="select" optional="true" label="Edge color of the marker" help=""> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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683 <option value="face">The edge color will always be the same as the face color</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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684 <expand macro="matplotlib_color"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
685 </param> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
686 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
687 <xml name="param_alpha"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
688 <param argument="alpha" type="float" value="" min="0" max="1" optional="true" label="Alpha blending value" help="Between 0 (transparent) and 1 (opaque)"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
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689 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
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690 <xml name="param_vmin"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
691 <param argument="vmin" type="float" value="" optional="true" label="Minimum value to normalize luminance data" help="If not set, it is inferred from the data and other keyword arguments"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
692 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
693 <xml name="param_vmax"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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|
694 <param argument="vmax" type="float" value="" optional="true" label="Maximum value to normalize luminance data" help="If not set, it is inferred from the data and other keyword arguments"/> |
7
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
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diff
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695 </xml> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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696 <xml name="section_matplotlib_pyplot_scatter"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
697 <section name="matplotlib_pyplot_scatter" title="Parameters for matplotlib.pyplot.scatter"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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698 <!--<param argument="marker" type="select" label="Marker style" help=""> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
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699 <option value="o">o</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
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700 <option value="v">v</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
701 <option value="^">^</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
702 <option value="8">8</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
703 <option value="s">s</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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704 <option value="p">p</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
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705 <option value="*">*</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
706 <option value="h">h</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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707 <option value="H">H</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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708 <option value="D">D</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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709 <option value="d">d</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
710 <option value="P">P</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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711 <option value="X">X</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
712 </param>--> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
713 <expand macro="param_alpha"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
714 <expand macro="param_vmin"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
715 <expand macro="param_vmax"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
716 <param argument="linewidths" type="float" value="0" label="Linewidth of the marker edges" help=""/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
717 <expand macro="param_matplotlib_pyplot_edgecolors"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
718 </section> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
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719 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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|
720 <token name="@CMD_params_matplotlib_pyplot_scatter@"><![CDATA[ |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
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diff
changeset
|
721 #if str($method.matplotlib_pyplot_scatter.vmin) != '' |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
722 vmin=$method.matplotlib_pyplot_scatter.vmin, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
723 #end if |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
724 #if str($method.matplotlib_pyplot_scatter.vmax) != '' |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
725 vmax=$method.matplotlib_pyplot_scatter.vmax, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
726 #end if |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
727 #if str($method.matplotlib_pyplot_scatter.alpha) != '' |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
728 alpha=$method.matplotlib_pyplot_scatter.alpha, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
729 #end if |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
730 lw=$method.matplotlib_pyplot_scatter.linewidths, |
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
731 #if $method.matplotlib_pyplot_scatter.edgecolors |
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
732 ec='$method.matplotlib_pyplot_scatter.edgecolors' |
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
733 #end if |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
734 ]]></token> |
1
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
735 <xml name="conditional_stripplot"> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
736 <conditional name="stripplot"> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
737 <param argument="stripplot" type="select" label="Add a stripplot on top of the violin plot" help=""> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
738 <option value="True">Yes</option> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
739 <option value="False">No</option> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
740 </param> |
1
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
741 <when value="True"> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
742 <conditional name="jitter"> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
743 <param argument="jitter" type="select" label="Add a jitter to the stripplot" help=""> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
744 <option value="True">Yes</option> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
745 <option value="False">No</option> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
746 </param> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
747 <when value="True"> |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
748 <param argument="size" type="float" min="0" value="1" label="Size of the jitter points" help=""/> |
1
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
749 </when> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
750 <when value="False"/> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
751 </conditional> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
752 </when> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
753 <when value="False"/> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
754 </conditional> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
755 </xml> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
756 <token name="@CMD_conditional_stripplot@"><![CDATA[ |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
757 stripplot=$method.violin_plot.stripplot.stripplot, |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
758 #if $method.violin_plot.stripplot.stripplot == "True" |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
759 jitter=$method.violin_plot.stripplot.jitter.jitter, |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
760 #if $method.violin_plot.stripplot.jitter.jitter == "True" |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
761 size=$method.violin_plot.stripplot.jitter.size, |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
762 #end if |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
763 #end if |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
764 ]]></token> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
765 <xml name="param_scale"> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
766 <param argument="scale" type="select" label="Method used to scale the width of each violin"> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
767 <option value="area">area: each violin will have the same area</option> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
768 <option value="count">count: the width of the violins will be scaled by the number of observations in that bin</option> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
769 <option value="width" selected="true">width: each violin will have the same width</option> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
770 </param> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
771 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
772 <token name="@CMD_params_violin_plots@"><![CDATA[ |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
773 @CMD_conditional_stripplot@ |
7
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
774 multi_panel=$method.violin_plot.multi_panel.multi_panel, |
1
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
775 #if $method.multi_panel.violin_plot.multi_panel == "True" and str($method.violin_plot.multi_panel.width) != '' and str($method.violin_plot.multi_panel.height) != '' |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
776 figsize=($method.violin_plot.multi_panel.width, $method.violin_plot.multi_panel.height) |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
777 #end if |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
778 scale='$method.violin_plot.scale', |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
779 ]]></token> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
780 <xml name="seaborn_violinplot"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
781 <section name="seaborn_violinplot" title="Parameters for seaborn.violinplot"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
782 <param argument="bw" type="select" label="Name of a reference rule when computing the kernel bandwidth"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
783 <option value="scott">scott</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
784 <option value="silverman">silverman</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
785 </param> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
786 <param argument="orient" type="select" optional="true" label="Orientation of the plot"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
787 <option value="v">vertical</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
788 <option value="h">horizontal</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
789 </param> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
790 <param argument="linewidth" type="float" value="0" label="Width of the gray lines that frame the plot elements" help=""/> |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
791 <param argument="color" type="select" optional="true" label="Color for all of the elements" help=""> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
792 <expand macro="matplotlib_color"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
793 </param> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
794 <param argument="saturation" type="float" value="0.75" min="0" max="1" label="Proportion of the original saturation to draw colors at" help=""/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
795 </section> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
796 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
797 <token name="@CMD_params_seaborn_violinplot@"><![CDATA[ |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
798 bw='$method.seaborn_violinplot.bw', |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
799 #if $method.seaborn_violinplot.orient |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
800 orient='$method.seaborn_violinplot.orient', |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
801 #end if |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
802 linewidth=$method.seaborn_violinplot.linewidth, |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
803 #if $method.seaborn_violinplot.color |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
804 color='$method.seaborn_violinplot.color', |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
805 #end if |
4
55f2212bb675
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit ef863b8664b89ae02bb232a1277798dd0503e785"
iuc
parents:
3
diff
changeset
|
806 saturation=$method.seaborn_violinplot.saturation |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
807 ]]></token> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
808 <xml name="param_color"> |
7
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
809 <param argument="color" type="text" value="" optional="true" label="Keys for annotations of observations/cells or variables/genes" help="One or a list of comma-separated index or key from either '.obs' or '.var'"> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
810 <expand macro="sanitize_query" /> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
811 </param> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
812 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
813 <token name="@CMD_param_color@"><![CDATA[ |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
814 #if $method.color |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
815 #set $color = ([x.strip() for x in str($method.color).split(',')]) |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
816 color=$color, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
817 #end if |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
818 ]]></token> |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
819 <xml name="param_groups"> |
7
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
820 <param argument="groups" type="text" value="" optional="true" label="Categorical observation annotations to plot" help="Comma-separated"> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
821 <expand macro="sanitize_query" /> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
822 </param> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
823 </xml> |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
824 <token name="@CMD_params_groups@"><![CDATA[ |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
825 #if $method.groups |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
826 #set $groups=([x.strip() for x in str($method.groups).split(',')]) |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
827 groups=$groups, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
828 #end if |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
829 ]]></token> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
830 <xml name="pl_components"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
831 <repeat name="components" title="Component"> |
7
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
832 <param argument="axis1" type="text" value="1" label="X-Axis" help=""> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
833 <expand macro="sanitize_query" /> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
834 </param> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
835 <param argument="axis2" type="text" value="2" label="Y-Axis" help=""> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
836 <expand macro="sanitize_query" /> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
837 </param> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
838 </repeat> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
839 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
840 <token name="@CMD_params_pl_components@"><![CDATA[ |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
841 #if len($method.plot.components) > 0 |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
842 #set $components=[] |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
843 #for $i, $s in enumerate($method.plot.components) |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
844 #silent $components.append(str($s.axis1) + ',' + str($s.axis2)) |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
845 #end for |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
846 components=$components, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
847 #end if |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
848 ]]> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
849 </token> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
850 <xml name="param_projection"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
851 <param argument="projection" type="select" label="Projection of plot" help=""> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
852 <option value="2d">2d</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
853 <option value="3d">3d</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
854 </param> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
855 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
856 <xml name="param_legend_loc"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
857 <param argument="legend_loc" type="select" label="Location of legend" help=""> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
858 <option value="none">none</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
859 <option value="right margin" selected="true">right margin</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
860 <option value="on data">on data</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
861 <option value="on data export">on data export</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
862 <option value="best">best</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
863 <option value="upper right">upper right</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
864 <option value="upper left">upper left</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
865 <option value="lower left">lower left</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
866 <option value="lower right">lower right</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
867 <option value="center left">center left</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
868 <option value="center right">center right</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
869 <option value="lower center">lower center</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
870 <option value="upper center">upper center</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
871 <option value="center">center</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
872 </param> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
873 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
874 <xml name="param_legend_fontsize"> |
1
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
875 <param argument="legend_fontsize" type="integer" optional="true" value="" label="Legend font size" help=""/> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
876 </xml> |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
877 <token name="@CMD_param_legend_fontsize@"><![CDATA[ |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
878 #if str($method.plot.legend_fontsize) != '' |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
879 legend_fontsize=$method.plot.legend_fontsize, |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
880 #end if |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
881 ]]> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
882 </token> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
883 <xml name="param_legend_fontweight"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
884 <param argument="legend_fontweight" type="select" label="Legend font weight" help=""> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
885 <option value="light">light</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
886 <option value="normal" selected="true">normal</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
887 <option value="medium">medium</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
888 <option value="semibold">semibold</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
889 <option value="bold">bold</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
890 <option value="heavy">heavy</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
891 <option value="black">black</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
892 </param> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
893 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
894 <xml name="param_palette"> |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
895 <param argument="palette" type="select" optional="true" label="Colors to use for plotting categorical annotation groups" help=""> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
896 <expand macro="matplotlib_pyplot_colormap"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
897 </param> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
898 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
899 <xml name="param_color_map"> |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
900 <param argument="color_map" type="select" optional="true" label="Color map to use for continous variables" help=""> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
901 <expand macro="matplotlib_pyplot_colormap"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
902 </param> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
903 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
904 <xml name="param_frameon"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
905 <param argument="frameon" type="boolean" truevalue="True" falsevalue="False" checked="true" label="Draw a frame around the scatter plot?" help=""/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
906 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
907 <xml name="param_right_margin"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
908 <param argument="right_margin" type="float" value="1" label="Width of the space right of each plotting panel" help=""/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
909 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
910 <xml name="param_left_margin"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
911 <param argument="left_margin" type="float" value="1" label="Width of the space left of each plotting panel" help=""/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
912 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
913 <xml name="param_size"> |
1
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
914 <param argument="size" type="float" optional="true" value="" label="Point size" help=""/> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
915 </xml> |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
916 <token name="@CMD_param_size@"><![CDATA[ |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
917 #if str($method.plot.size) != '' |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
918 size=$method.plot.size, |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
919 #end if |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
920 ]]> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
921 </token> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
922 <xml name="param_title"> |
7
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
923 <param argument="title" type="text" value="" optional="true" label="Title for panels" help="Titles must be separated by a comma"> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
924 <expand macro="sanitize_query" /> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
925 </param> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
926 </xml> |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
927 <token name="@CMD_param_title@"><![CDATA[ |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
928 #if $method.plot.title |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
929 title='$method.plot.title', |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
930 #end if |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
931 ]]> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
932 </token> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
933 <xml name="param_sort_order"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
934 <param argument="sort_order" type="boolean" truevalue="True" falsevalue="False" checked="true" label="Sort order?" help="For continuous annotations used as color parameter, plot data points with higher values on top of others."/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
935 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
936 <xml name="param_sort_order"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
937 <param argument="sort_order" type="boolean" truevalue="True" falsevalue="False" checked="true" label="Sort order?" help="For continuous annotations used as color parameter, plot data points with higher values on top of others."/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
938 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
939 <xml name="param_ncols"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
940 <param argument="ncols" type="integer" min="0" value="4" label="Number of panels per row" help=""/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
941 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
942 <xml name="param_wspace"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
943 <param argument="wspace" type="float" min="0" value="0.1" label="Width of the space between multiple panels" help=""/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
944 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
945 <xml name="param_hspace"> |
4
55f2212bb675
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit ef863b8664b89ae02bb232a1277798dd0503e785"
iuc
parents:
3
diff
changeset
|
946 <param argument="hspace" type="float" min="0" value="0.25" label="Height of the space between multiple panels" help=""/> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
947 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
948 <xml name="pl_edges"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
949 <conditional name="edges"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
950 <param argument="edges" type="select" label="Show edges?"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
951 <option value="True">Yes</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
952 <option value="False" selected="true">No</option> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
953 </param> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
954 <when value="True"> |
1
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
955 <param argument="edges_width" type="float" min="0" value="0.1" label="Width of edges"/> |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
956 <param argument="edges_color" type="select" optional="true" label="Color of edges"> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
957 <expand macro="matplotlib_color"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
958 </param> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
959 </when> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
960 <when value="False"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
961 </conditional> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
962 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
963 <token name="@CMD_pl_edges@"><![CDATA[ |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
964 #if str($method.edges.edges) == 'True' |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
965 edges=True, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
966 edges_width=$method.edges.edges_width, |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
967 #if $method.edges.edges_color |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
968 edges_color='$method.edges.edges_color', |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
969 #end if |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
970 #else |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
971 edges=False, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
972 #end if |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
973 ]]> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
974 </token> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
975 <xml name="param_arrows"> |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
976 <param argument="arrows" type="boolean" truevalue="True" falsevalue="False" checked="false" label="Show arrows?" help="It requires to run 'tl.rna_velocity' before."/> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
977 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
978 <xml name="param_cmap"> |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
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diff
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|
979 <param argument="cmap" type="select" optional="true" label="Colors to use for plotting categorical annotation groups" help=""> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
980 <expand macro="matplotlib_pyplot_colormap"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
981 </param> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
982 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
983 <xml name="pl_attribute_section"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
984 <section name="plot" title="Plot attributes"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
|
985 <expand macro="pl_components"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
986 <expand macro="param_projection"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
|
987 <expand macro="param_legend_loc"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
988 <expand macro="param_legend_fontsize"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
989 <expand macro="param_legend_fontweight"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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|
990 <expand macro="param_size"/> |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
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|
991 <expand macro="param_color_map"/> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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|
992 <expand macro="param_palette"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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|
993 <expand macro="param_frameon"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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|
994 <expand macro="param_ncols"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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|
995 <expand macro="param_wspace"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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|
996 <expand macro="param_hspace"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
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|
997 <expand macro="param_title"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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|
998 </section> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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changeset
|
999 </xml> |
ed64c90a9b93
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iuc
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|
1000 <token name="@CMD_pl_attribute_section@"><![CDATA[ |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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|
1001 projection='$method.plot.projection', |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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diff
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|
1002 legend_loc='$method.plot.legend_loc', |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
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|
1003 @CMD_param_legend_fontsize@ |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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|
1004 legend_fontweight='$method.plot.legend_fontweight', |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
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|
1005 @CMD_param_size@ |
12
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
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|
1006 #if $method.plot.color_map |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
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|
1007 color_map='$method.plot.color_map', |
1
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
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0
diff
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|
1008 #end if |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
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|
1009 #if $method.plot.palette |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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|
1010 palette='$method.plot.palette', |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
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2
diff
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|
1011 #end if |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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|
1012 frameon=$method.plot.frameon, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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|
1013 ncols=$method.plot.ncols, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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changeset
|
1014 wspace=$method.plot.wspace, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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|
1015 hspace=$method.plot.hspace, |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
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diff
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|
1016 @CMD_param_title@ |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
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|
1017 ]]> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
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diff
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|
1018 </token> |
1
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
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|
1019 <xml name="options_layout"> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
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|
1020 <option value="fa">fa: ForceAtlas2</option> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
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|
1021 <option value="fr">fr: Fruchterman-Reingold</option> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
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|
1022 <option value="grid_fr">grid_fr: Grid Fruchterman Reingold, faster than "fr"</option> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
1023 <option value="kk">kk: Kamadi Kawai’, slower than "fr"</option> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
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|
1024 <option value="drl">drl: Distributed Recursive Layout, pretty fast</option> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
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|
1025 <option value="rt">rt: Reingold Tilford tree layout</option> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
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|
1026 <option value="eq_tree">eq_tree: Equally spaced tree</option> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
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|
1027 </xml> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
1028 <xml name="param_layout"> |
8
5342ce58cd1e
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 7b8af82cb8a3438d2a6535986e357527e5c6efec"
iuc
parents:
7
diff
changeset
|
1029 <param argument="layout" type="select" label="Plotting layout" optional="false" help=""> |
1
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
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|
1030 <expand macro="options_layout"/> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
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|
1031 </param> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
1032 </xml> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
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|
1033 <xml name="param_root"> |
7
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
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diff
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|
1034 <param argument="root" type="text" value="" label="Comma-separated roots" help="If choosing a tree layout, this is the index of the root node or a list of root node indices. If this is a non-empty vector then the supplied node IDs are used as the roots of the trees (or a single tree if the graph is connected). If this is 'None' or an empty list, the root vertices are automatically calculated based on topological sorting."> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1035 <expand macro="sanitize_query" /> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
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|
1036 </param> |
1
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
1037 </xml> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
1038 <xml name="param_random_state"> |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
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|
1039 <param argument="random_state" type="integer" value="0" label="Random state" help="For layouts with random initialization like 'fr', change this to use different intial states for the optimization. If 'None', the initial state is not reproducible."/> |
1
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
1040 </xml> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1041 <xml name="inputs_paga"> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1042 <param argument="threshold" type="float" min="0" value="0.01" label="Threshold to draw edges" help="Do not draw edges for weights below this threshold. Set to 0 if you want all edges. Discarding low-connectivity edges helps in getting a much clearer picture of the graph."/> |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1043 <expand macro="param_groups"/> |
7
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1044 <param argument="color" type="text" value="" label="The node colors" help="Gene name or obs. annotation, and also plots the degree of the abstracted graph when passing 'degree_dashed', 'degree_solid'."> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1045 <expand macro="sanitize_query" /> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1046 </param> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1047 <param argument="pos" type="data" format="tabular,csv,tsv" optional="true" label="Two-column tabular file storing the x and y coordinates for drawing" help=""/> |
7
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1048 <param argument="labels" type="text" value="" label="Comma-separated node labels" help="If none is provided, this defaults to the group labels stored in the categorical for which 'tl.paga' has been computed."> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1049 <expand macro="sanitize_query" /> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1050 </param> |
1
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
1051 <expand macro="param_layout"/> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1052 <param argument="init_pos" type="data" format="tabular,csv,tsv" optional="true" label="Two-column tabular file storing the x and y coordinates for initializing the layout" help=""/> |
1
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
1053 <expand macro="param_random_state"/> |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
1054 <expand macro="param_root"/> |
7
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1055 <param argument="transitions" type="text" value="" label="Key corresponding to the matrix storing the arrows" help="Key for '.uns['paga']', e.g. 'transistions_confidence'"> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1056 <expand macro="sanitize_query" /> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1057 </param> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1058 <param argument="solid_edges" type="text" value="connectivities" label="Key corresponding to the matrix storing the edges to be drawn solid black" help="Key for uns/paga"> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1059 <expand macro="sanitize_query" /> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1060 </param> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1061 <param argument="dashed_edges" type="text" value="" optional="true" label="Key corresponding to the matrix storing the edges to be drawn dashed grey" help="Key for uns/paga. If not set, no dashed edges are drawn."> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1062 <expand macro="sanitize_query" /> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1063 </param> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1064 <param argument="single_component" type="boolean" truevalue="True" falsevalue="False" checked="false" label="Restrict to largest connected component?" help=""/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1065 <param argument="fontsize" type="integer" min="0" value="1" label="Font size for node labels" help=""/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1066 <param argument="node_size_scale" type="float" min="0" value="1.0" label="Size of the nodes" help=""/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1067 <param argument="node_size_power" type="float" min="0" value="0.5" label="Power with which groups sizes influence the radius of the nodes" help=""/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1068 <param argument="edge_width_scale" type="float" min="0" value="5" label="Scale for edge width" help=""/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1069 <param argument="min_edge_width" type="float" min="0" value="" optional="true" label="Min width of solid edges" help=""/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1070 <param argument="max_edge_width" type="float" min="0" value="" optional="true" label="Max width of solid and dashed edges" help=""/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1071 <param argument="arrowsize" type="integer" min="0" value="30" label="Arrow size" help="For directed graphs, choose the size of the arrow head head's length and width."/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1072 <param argument="normalize_to_color" type="boolean" truevalue="True" falsevalue="False" checked="false" label="Normalize categorical plots to color or the underlying grouping?" help=""/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1073 <expand macro="param_cmap"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1074 <expand macro="param_title"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1075 <expand macro="param_frameon"/> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1076 </xml> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1077 <token name="@CMD_params_pl_paga@"><![CDATA[ |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1078 threshold=$method.threshold, |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1079 #if $method.groups |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1080 #set $groups=([x.strip() for x in str($method.groups).split(',')]) |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1081 groups=$groups, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1082 #end if |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1083 #if $method.color |
1
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
1084 #set $color=([x.strip() for x in str($method.color).split(',')]) |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
1085 color=$color, |
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
1086 #end if |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1087 #if $method.pos |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1088 pos=np.fromfile($method.pos, dtype=dt), |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1089 #end if |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1090 #if $method.labels |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1091 #set $labels=([x.strip() for x in str($method.labels).split(',')]) |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1092 labels=$labels, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1093 #end if |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1094 layout='$method.layout', |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1095 #if $method.init_pos |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1096 init_pos=np.fromfile($method.init_pos, dtype=dt), |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1097 #end if |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1098 random_state=$method.random_state, |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1099 #if $method.root |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1100 #set $root=([int(x.strip()) for x in str($method.root).split(',')]) |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1101 root=$root, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1102 #end if |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1103 #if $method.transitions |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1104 transitions='$method.transitions', |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1105 #end if |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1106 solid_edges='$method.solid_edges', |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1107 #if $method.dashed_edges |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1108 dashed_edges='$method.dashed_edges', |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1109 #end if |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1110 single_component=$method.single_component, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1111 fontsize=$method.fontsize, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1112 node_size_scale=$method.node_size_scale, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1113 node_size_power=$method.node_size_power, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1114 edge_width_scale=$method.edge_width_scale, |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
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|
1115 #if str($method.min_edge_width) != '' |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1116 min_edge_width=$method.min_edge_width, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1117 #end if |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1118 #if str($method.max_edge_width) != '' |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1119 max_edge_width=$method.max_edge_width, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1120 #end if |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1121 arrowsize=$method.arrowsize, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1122 normalize_to_color=$method.normalize_to_color, |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1123 #if $method.cmap |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1124 cmap='$method.cmap', |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1125 #end if |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1126 #if $method.title |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1127 title='$method.title', |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1128 #end if |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1129 frameon=$method.frameon, |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1130 ]]> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1131 </token> |
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1132 <xml name="param_swap_axes"> |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1133 <param argument="swap_axes" type="boolean" truevalue="True" falsevalue="False" checked="false" label="Swap axes?" help="By default, the x axis contains 'var_names' (e.g. genes) and the y axis the 'groupby' categories (if any). By setting 'swap_axes' then x are the 'groupby' categories and y the 'var_names'."/> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
iuc
parents:
diff
changeset
|
1134 </xml> |
1
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
1135 <xml name="gene_symbols"> |
7
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1136 <param argument="gene_symbols" type="text" value="" optional="true" label="Key for field in '.var' that stores gene symbols"> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1137 <expand macro="sanitize_query" /> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1138 </param> |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1139 </xml> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1140 <xml name="param_n_genes"> |
15
f3ad813a58a3
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit c21958f44b81d740191999fb6015d5ae69538ee0
iuc
parents:
14
diff
changeset
|
1141 <param argument="n_genes" type="integer" min="0" value="10" label="Number of genes to show" help="It is only used if you are not specifying certain variable names"/> |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1142 </xml> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1143 <xml name="pl_dotplot"> |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1144 <param argument="color_map" type="select" optional="true" label="Color palette"> |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1145 <expand macro="matplotlib_pyplot_colormap"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1146 </param> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1147 <param argument="dot_max" type="float" value="" min="0" max="1" optional="true" label="Maximum dot size" help="If none, the maximum dot size is set to the maximum fraction value found (e.g. 0.6). If given, the value should be a number between 0 and 1. All fractions larger than dot_max are clipped to this value."/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1148 <param argument="dot_min" type="float" value="" min="0" max="1" optional="true" label="Minimum dot size" help="If none, the minimum dot size is set to 0. If given, the value should be a number between 0 and 1. All fractions smaller than dot_min are clipped to this value."/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1149 <expand macro="section_matplotlib_pyplot_scatter"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1150 </xml> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1151 <token name="@CMD_pl_dotplot@"><![CDATA[ |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1152 #if $method.color_map |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1153 color_map='$method.color_map', |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1154 #end if |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1155 #if str($method.dot_max) != '' |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1156 dot_max=$method.dot_max, |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1157 #end if |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1158 #if str($method.dot_min) != '' |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1159 dot_min=$method.dot_min, |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1160 #end if |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1161 @CMD_params_matplotlib_pyplot_scatter@ |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1162 ]]> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1163 </token> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1164 <xml name="param_key"> |
7
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1165 <param argument="key" type="text" value="" label="Key used to store the ranking results in 'uns'"> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1166 <expand macro="sanitize_query" /> |
a407e7f8bdc1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
iuc
parents:
6
diff
changeset
|
1167 </param> |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1168 </xml> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1169 <xml name="pl_heatmap"> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1170 <expand macro="param_swap_axes"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1171 <param argument="show_gene_labels" type="boolean" truevalue="True" falsevalue="False" checked="false" label="Show gene labels?" help="By default gene labels are shown when there are 50 or less genes. Otherwise the labels are removed."/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1172 <section name="matplotlib_pyplot_imshow" title="Parameters for matplotlib.pyplot.imshow"> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1173 <expand macro="param_cmap"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1174 <param name="interpolation" type="select" label="Interpolation method" help=""> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1175 <option value="None">none</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1176 <option value="nearest">nearest</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1177 <option value="bilinear">bilinear</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1178 <option value="bicubic">bicubic</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1179 <option value="spline16">spline16</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1180 <option value="spline36">spline36</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1181 <option value="hanning">hanning</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1182 <option value="hamming">hamming</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1183 <option value="hermite">hermite</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1184 <option value="kaiser">kaiser</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1185 <option value="quadric">quadric</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1186 <option value="catrom">catrom</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1187 <option value="gaussian">gaussian</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1188 <option value="bessel">bessel</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1189 <option value="sinc">sinc</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1190 <option value="mitchell">mitchell</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1191 <option value="lanczos">lanczos</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1192 </param> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1193 <expand macro="param_alpha"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1194 <expand macro="param_vmin"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1195 <expand macro="param_vmax"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1196 <param name="origin" type="select" label="Place the [0,0] index of the array in the upper left or lower left corner of the axes" help=" The convention 'upper' is typically used for matrices and images."> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1197 <option value="upper">Upper</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1198 <option value="lower">Lower</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1199 </param> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1200 </section> |
1
a9f14e2d1655
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
iuc
parents:
0
diff
changeset
|
1201 </xml> |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1202 <token name="@CMD_pl_heatmap@"><![CDATA[ |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1203 swap_axes=$method.swap_axes, |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1204 show_gene_labels=$method.show_gene_labels, |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1205 #if $method.matplotlib_pyplot_imshow.cmap |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1206 cmap='$method.matplotlib_pyplot_imshow.cmap', |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1207 #end if |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1208 #if str($method.matplotlib_pyplot_imshow.interpolation) != 'None' |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1209 interpolation='$method.matplotlib_pyplot_imshow.interpolation', |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1210 #end if |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1211 #if str($method.matplotlib_pyplot_imshow.alpha) != '' |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1212 alpha=$method.matplotlib_pyplot_imshow.alpha, |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1213 #end if |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1214 #if str($method.matplotlib_pyplot_imshow.vmin) != '' |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1215 vmin=$method.matplotlib_pyplot_imshow.vmin, |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1216 #end if |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1217 #if str($method.matplotlib_pyplot_imshow.vmax) != '' |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1218 vmax=$method.matplotlib_pyplot_imshow.vmax, |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1219 #end if |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1220 origin='$method.matplotlib_pyplot_imshow.origin' |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1221 ]]> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1222 </token> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1223 <xml name="pl_rank_genes_groups_ext"> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1224 <expand macro="param_groups"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1225 <expand macro="param_n_genes"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1226 <expand macro="param_key"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1227 </xml> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1228 <token name="@CMD_pl_rank_genes_groups_ext@"><![CDATA[ |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1229 @CMD_params_groups@ |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1230 n_genes=$method.n_genes, |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1231 #if $method.key |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1232 key='$method.key', |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1233 #end if |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1234 ]]> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1235 </token> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1236 <xml name="pl_matrixplot"> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1237 <expand macro="param_swap_axes"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1238 <section name="matplotlib_pyplot_pcolor" title="Parameters for matplotlib.pyplot.pcolor"> |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1239 <param argument="cmap" type="select" optional="true" label="Color palette"> |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1240 <expand macro="seaborn_color_palette_options"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1241 </param> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1242 <param argument="vmin" type="float" value="" optional="true" label="Minimum value to anchor the colormap" help=""/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1243 <param argument="vmax" type="float" value="" optional="true" label="Maximum value to anchor the colormap" help=""/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1244 <expand macro="param_matplotlib_pyplot_edgecolors"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1245 <expand macro="param_alpha"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1246 <param argument="snap" type="boolean" truevalue="True" falsevalue="False" checked="false" label="Snap the mesh to pixel boundaries?" help=""/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1247 </section> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1248 </xml> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1249 <token name="@CMD_pl_matrixplot@"><![CDATA[ |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1250 swap_axes=$method.swap_axes, |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1251 #if $method.matplotlib_pyplot_pcolor.cmap |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1252 cmap='$method.matplotlib_pyplot_pcolor.cmap', |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1253 #end if |
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1254 #if str($method.matplotlib_pyplot_pcolor.vmin) != '' |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1255 vmin=$method.matplotlib_pyplot_pcolor.vmin, |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1256 #end if |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1257 #if str($method.matplotlib_pyplot_pcolor.vmax) != '' |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1258 vmax=$method.matplotlib_pyplot_pcolor.vmax, |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1259 #end if |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1260 #if $method.matplotlib_pyplot_pcolor.edgecolors |
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1261 ec='$method.matplotlib_pyplot_pcolor.edgecolors', |
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1262 #end if |
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
iuc
parents:
11
diff
changeset
|
1263 #if str($method.matplotlib_pyplot_pcolor.alpha) != '' |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1264 alpha=$method.matplotlib_pyplot_pcolor.alpha, |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1265 #end if |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1266 snap=$method.matplotlib_pyplot_pcolor.snap |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
diff
changeset
|
1267 ]]> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
parents:
2
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|
1268 </token> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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parents:
2
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|
1269 <xml name="pl_stacked_violin"> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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2
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|
1270 <expand macro="param_swap_axes"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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|
1271 <section name="violin_plot" title="Violin plot attributes"> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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2
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|
1272 <expand macro="conditional_stripplot"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
iuc
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2
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|
1273 <expand macro="param_scale"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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parents:
2
diff
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|
1274 </section> |
12
94c19fb1281c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
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1275 <param argument="row_palette" type="select" optional="true" label="Colors to use in each of the stacked violin plots"> |
3
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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parents:
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|
1276 <option value="muted">muted</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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parents:
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|
1277 <expand macro="seaborn_color_palette_options"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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|
1278 </param> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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1279 <param argument="standard_scale" type="select" label="Standardize a dimension between 0 and 1" help="Each variable or observation is subtracted by the minimum and divided each by its maximum."> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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diff
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1280 <option value="None">No standardization</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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|
1281 <option value="var">Standardization on variable</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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1282 <option value="obs">Standardization on observation</option> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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1283 </param> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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|
1284 <expand macro="seaborn_violinplot"/> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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1285 </xml> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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1286 <token name="@CMD_pl_stacked_violin@"><![CDATA[ |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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1287 swap_axes=$method.swap_axes, |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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1288 @CMD_conditional_stripplot@ |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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1289 scale='$method.violin_plot.scale', |
12
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
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1290 #if $method.row_palette |
3
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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1291 row_palette='$method.row_palette', |
12
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
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1292 #end if |
3
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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1293 #if str($method.standard_scale) != 'None' |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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1294 standard_scale='$method.standard_scale', |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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1295 #end if |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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1296 @CMD_params_seaborn_violinplot@ |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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1297 ]]> |
d7ea9b5e6df1
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3b41d687ff30583540d055f6995de00530cca81d"
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1298 </token> |
0
ed64c90a9b93
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 92f85afaed0097d1879317a9f513093fce5481d6
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1299 </macros> |