Mercurial > repos > iuc > scanpy_normalize

changeset 10:ab55fe8030b6 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 806c15e8f3ae7acea300ebeb83222162c42eca14"
author iuc
date Wed, 22 Sep 2021 21:12:45 +0000
parents 51d945eab1e1
children c9cb76cf8d6c
files macros.xml normalize.xml
diffstat 2 files changed, 8 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Mon Apr 12 18:18:24 2021 +0000
+++ b/macros.xml	Wed Sep 22 21:12:45 2021 +0000
@@ -10,6 +10,11 @@
             <yield />
         </requirements>
     </xml>
+    <xml name="bio_tools">
+        <xrefs>
+            <xref type="bio.tools">scanpy</xref>
+        </xrefs>
+    </xml>
     <xml name="citations">
         <citations>
             <citation type="doi">10.1186/s13059-017-1382-0</citation>
--- a/normalize.xml	Mon Apr 12 18:18:24 2021 +0000
+++ b/normalize.xml	Wed Sep 22 21:12:45 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="scanpy_normalize" name="Normalize" version="@galaxy_version@" profile="@profile@">
     <description>with scanpy</description>
+    <expand macro="bio_tools"/>
     <macros>
         <import>macros.xml</import>
     </macros>
@@ -168,7 +169,7 @@
                     <has_text_matching expression="log=True"/>
                 </assert_contents>
             </output>
-            <output name="anndata_out" file="pp.recipe_zheng17.random-randint.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frace="0.15"/>
+            <output name="anndata_out" file="pp.recipe_zheng17.random-randint.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frac="0.15"/>
         </test>
         <test>
             <!-- test 2 -->
@@ -214,7 +215,7 @@
                     <has_text_matching expression="log=True"/>
                 </assert_contents>
             </output>
-            <output name="anndata_out" file="pp.recipe_seurat.recipe_zheng17.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frace="0.15"/>
+            <output name="anndata_out" file="pp.recipe_seurat.recipe_zheng17.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frac="0.25"/>
         </test>
     </tests>
     <help><![CDATA[