Mercurial > repos > iuc > scanpy_normalize

comparison normalize.xml @ 10:ab55fe8030b6 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 806c15e8f3ae7acea300ebeb83222162c42eca14"
author iuc
date Wed, 22 Sep 2021 21:12:45 +0000
parents 5342ce58cd1e
children c9cb76cf8d6c
comparison
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9:51d945eab1e1 10:ab55fe8030b6
1 <tool id="scanpy_normalize" name="Normalize" version="@galaxy_version@" profile="@profile@"> 1 <tool id="scanpy_normalize" name="Normalize" version="@galaxy_version@" profile="@profile@">
2 <description>with scanpy</description> 2 <description>with scanpy</description>
3 <expand macro="bio_tools"/>
3 <macros> 4 <macros>
4 <import>macros.xml</import> 5 <import>macros.xml</import>
5 </macros> 6 </macros>
6 <expand macro="requirements"/> 7 <expand macro="requirements"/>
7 <expand macro="version_command"/> 8 <expand macro="version_command"/>
166 <has_text_matching expression="sc.pp.recipe_zheng17"/> 167 <has_text_matching expression="sc.pp.recipe_zheng17"/>
167 <has_text_matching expression="n_top_genes=1000"/> 168 <has_text_matching expression="n_top_genes=1000"/>
168 <has_text_matching expression="log=True"/> 169 <has_text_matching expression="log=True"/>
169 </assert_contents> 170 </assert_contents>
170 </output> 171 </output>
171 <output name="anndata_out" file="pp.recipe_zheng17.random-randint.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frace="0.15"/> 172 <output name="anndata_out" file="pp.recipe_zheng17.random-randint.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frac="0.15"/>
172 </test> 173 </test>
173 <test> 174 <test>
174 <!-- test 2 --> 175 <!-- test 2 -->
175 <param name="adata" value="paul15_subsample.h5ad" /> 176 <param name="adata" value="paul15_subsample.h5ad" />
176 <conditional name="method"> 177 <conditional name="method">
212 <assert_contents> 213 <assert_contents>
213 <has_text_matching expression="sc.pp.recipe_seurat"/> 214 <has_text_matching expression="sc.pp.recipe_seurat"/>
214 <has_text_matching expression="log=True"/> 215 <has_text_matching expression="log=True"/>
215 </assert_contents> 216 </assert_contents>
216 </output> 217 </output>
217 <output name="anndata_out" file="pp.recipe_seurat.recipe_zheng17.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frace="0.15"/> 218 <output name="anndata_out" file="pp.recipe_seurat.recipe_zheng17.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frac="0.25"/>
218 </test> 219 </test>
219 </tests> 220 </tests>
220 <help><![CDATA[ 221 <help><![CDATA[
221 Normalize total counts per cell (`pp.normalize_per_cell`) 222 Normalize total counts per cell (`pp.normalize_per_cell`)
222 ========================================================= 223 =========================================================